| Protein: | rhp23 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 368 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rhp23.
| Description | E-value | Query Range |
Subject Range |
|
|
279.0 | [0..1] | [366..1] |
|
|
269.0 | [0..1] | [366..1] |
|
|
256.0 | [0..1] | [366..1] |
|
Region A: Residues: [1-368] |
1 11 21 31 41 51
| | | | | |
1 MNLTFKNLQQ QKFVISDVSA DTKISELKEK IQTQQNYEVE RQKLIYSGRI LADDKTVGEY 60
61 NIKEQDFIVC MVSRPKTSTS TPKSAASPAP NPPASVPEKK VEAPSSTVAE STSTTQTVAA 120
121 AAPSNPDTTA TSEAPIDANT LAVGAQRNVA VENMVEMGYE RSEVERAMRA AFNNPDRAVE 180
181 YLLTGIPEDI LNRQREESAA ALAAQQQQSE ALAPTSTGQP ANLFEQAALS ENENQEQPSN 240
241 TVGDDPLGFL RSIPQFQQLR QIVQQNPQML ETILQQIGQG DPALAQAITQ NPEAFLQLLA 300
301 EGAEGESALP SGGIQIQITQ EESESIDRLC QLGFDRNIVI QAYLACDKNE ELAANYLFEH 360
361 GHESEDEP
|
| Detection Method: |  |
| Confidence: | 58.522879 |
| Match: | 1oqyA |
| Description: | Structure of the DNA repair protein hHR23a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| damaged DNA binding | 4.47463096529128 | bayes_pls_golite062009 |
| peptidase activity | 4.11397638448668 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 3.93085931991298 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 3.71144418714309 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 3.30801071565148 | bayes_pls_golite062009 |
| DNA binding | 2.85587480999529 | bayes_pls_golite062009 |
| nucleic acid binding | 2.77967439078472 | bayes_pls_golite062009 |
| hydrolase activity | 2.77871378503369 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 2.72499875710239 | bayes_pls_golite062009 |
| binding | 2.47268310088535 | bayes_pls_golite062009 |
| protein tag | 2.08744267430616 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 2.00465244189638 | bayes_pls_golite062009 |
| small conjugating protein binding | 1.96968415005987 | bayes_pls_golite062009 |
| ubiquitin binding | 1.89720476649564 | bayes_pls_golite062009 |
| transcription regulator activity | 1.42747465816672 | bayes_pls_golite062009 |
| protein binding | 1.15687168153762 | bayes_pls_golite062009 |
| SUMO ligase activity | 0.80391127659342 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 0.59805675560068 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.570143717979967 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.536856055841234 | bayes_pls_golite062009 |
| kinase activity | 0.506057697290914 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.410719674374641 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 0.387487703339719 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.366426020658587 | bayes_pls_golite062009 |
| protein kinase activity | 0.325253662829604 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.249928925871521 | bayes_pls_golite062009 |
| transferase activity | 0.236208643697075 | bayes_pls_golite062009 |
| polyubiquitin binding | 0.126322128629172 | bayes_pls_golite062009 |
