| Protein: | rga1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1150 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rga1.
| Description | E-value | Query Range |
Subject Range |
|
|
581.0 | [0..4] | [750..419] |
|
|
581.0 | [0..89] | [1142..71] |
|
|
579.0 | [0..3] | [634..318] |
|
Region A: Residues: [1-73] |
1 11 21 31 41 51
| | | | | |
1 MSQRDAKKDG LLYTTNGVSP TPPKRIPVPS RQNKIEENST TKNFPHSRHT STVAGTEGGS 60
61 SLSRRHTSAE SRK
|
| Detection Method: |  |
| Confidence: | 14.0 |
| Match: | 2gliA |
| Description: | Five-finger GLI1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [74-291] |
1 11 21 31 41 51
| | | | | |
1 ALPNQQQLAQ SGLLNKEEQQ SLKRSDTSVF PKAVRKVSSS KICASCGQVI SGQYVRALGN 60
61 IYHLECFRCH DCNSLVASKF FPIDDPTLNK QVPLCETDYF RRLDLLCASC GMALRGYYIT 120
121 ALNKKFHIEH FTCSLCYTVF GPNDSYYEYE GKVYCHYHYS TLFAARCCGC DGPILRQFVE 180
181 VYRNGVSQNW HVPCHMIYKF WNVKLCQKTS IETSKKKD
|
| Detection Method: | |
| Confidence: | 43.522879 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [292-624] |
1 11 21 31 41 51
| | | | | |
1 SELSQSQLRK REKHLEQKIF HIWHALSYFE EYTASCISDM LLLVSNGEFT KSVICAQKFI 60
61 RYIEILFKGI DSLETILSSF HAKSMPYVRE AKLLCKKLVS IFALLAKCHN SDIRDVAIVQ 120
121 DFLSLFTGLA HYLKLLIRIS LTGGLRLEQD HACKHALPQF LQTVEEARFV DQEGYDSSSF 180
181 DMPLNLANAS SDLCYVCHSA LEEDCVLLGE IRCHIGCLSC TKCKYNNREN YDWARWNNQT 240
241 KQIECYLCYT ESSNVSNDEP HPSFEYVSRL SQYIYLLRIA LVRLYTILME NNDSSQRKPL 300
301 SVDPKQENVS STVETAKQAE TTASSDSFRK YAN
|
| Detection Method: | |
| Confidence: | 2.08 |
| Match: | 1b8tA |
| Description: | Cysteine-rich (intestinal) protein, CRP, CRIP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.8684204787273 | bayes_pls_golite062009 |
| transcription regulator activity | 2.06804702015592 | bayes_pls_golite062009 |
| DNA binding | 1.80808173029022 | bayes_pls_golite062009 |
| nucleic acid binding | 1.60971311791582 | bayes_pls_golite062009 |
| protein binding | 1.30321965120678 | bayes_pls_golite062009 |
| transcription factor activity | 1.24900170210968 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.445717770012964 | bayes_pls_golite062009 |
| transcription activator activity | 0.367834529853475 | bayes_pls_golite062009 |
| transcription factor binding | 0.27835676711169 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 0.189821618942417 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.123912633676406 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.101784288585413 | bayes_pls_golite062009 |
| receptor activity | 0.0887087342257975 | bayes_pls_golite062009 |
| actin binding | 0.013566820730057 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.0115212357352044 | bayes_pls_golite062009 |
|
Region A: Residues: [625-710] |
1 11 21 31 41 51
| | | | | |
1 TLNDLRHLKS SRNRKATSNE TQSSSNSTET SKLSKNVSES GKDKSPHWHS HGGSITGKSI 60
61 VEQASSPLER RMDAFDENRA FTLDDI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [711-1043] |
1 11 21 31 41 51
| | | | | |
1 PKVISEQRNR EHRPNAFRHM PSYTDPSYRK NSGAIYDKND GTQKGLTPKS EDAPIRYLSD 60
61 LSNLELLFTK HVAVLILHPL VRDYYSLDEL MEMSDLRKGG FWEKFGKAFK GKDAEKKNVK 120
121 KKGTFGVPLE ILVERNNAQS TVGTGVGVKH IPAFIGNTLA AMKRKDMSVV GVFRKNGNIR 180
181 RLKELSDMLD VSPDSIDYEQ ETPIQLAALL KKFLRELPDP LLTFKLFGLF ITSSKLESEE 240
241 ERMRVLHLTI CLLPKGHRDT MEVIFGFLYW VASFSHIDDE VGSKMDIHNL ATVITPNILY 300
301 SKSNDPVDES FLAIEAVHLL IENFEKFCEV PRE
|
| Detection Method: | |
| Confidence: | 61.522879 |
| Match: | 1xa6A |
| Description: | Crystal Structure of the Human Beta2-Chimaerin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| Rho GTPase activator activity | 4.58620967349979 | bayes_pls_golite062009 |
| Rac GTPase activator activity | 4.48279904625182 | bayes_pls_golite062009 |
| binding | 2.79128751898373 | bayes_pls_golite062009 |
| GTPase regulator activity | 2.70614727793157 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 2.68579854252375 | bayes_pls_golite062009 |
| guanyl-nucleotide exchange factor activity | 2.06038764955701 | bayes_pls_golite062009 |
| enzyme regulator activity | 1.9750017471254 | bayes_pls_golite062009 |
| small GTPase regulator activity | 1.95738547986197 | bayes_pls_golite062009 |
| protein binding | 1.29100556128076 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.27693544428588 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.2233434243135 | bayes_pls_golite062009 |
| myosin heavy chain kinase activity | 1.15190288326422 | bayes_pls_golite062009 |
| Ras GTPase activator activity | 1.09070479183477 | bayes_pls_golite062009 |
| transcription regulator activity | 1.08577758274384 | bayes_pls_golite062009 |
| actin binding | 1.02058870188398 | bayes_pls_golite062009 |
| Rho guanyl-nucleotide exchange factor activity | 0.967362611034944 | bayes_pls_golite062009 |
| Ras guanyl-nucleotide exchange factor activity | 0.958295643211986 | bayes_pls_golite062009 |
| GTPase activator activity | 0.717730683557543 | bayes_pls_golite062009 |
| diacylglycerol binding | 0.61310450668925 | bayes_pls_golite062009 |
| nucleic acid binding | 0.480348726111787 | bayes_pls_golite062009 |
| DNA binding | 0.418154636457321 | bayes_pls_golite062009 |
| enzyme activator activity | 0.298334474872045 | bayes_pls_golite062009 |
| microfilament motor activity | 0.0044514849726196 | bayes_pls_golite062009 |
|
Region A: Residues: [1044-1150] |
1 11 21 31 41 51
| | | | | |
1 ISLLLDDPTL FYNNAAWTSK ELYKRCEEII SQMSLDERNT PKHTASTKRK RQPIRRVTTN 60
61 LTSDVPSGSE VADTNSLSST TKDEASPNSD AQPKPQVKPQ HAVIRDS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
