| Protein: | rad21 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 628 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rad21.
| Description | E-value | Query Range |
Subject Range |
|
|
428.0 | [0..1] | [625..1] |
|
|
424.0 | [0..1] | [625..1] |
|
|
421.0 | [0..1] | [625..1] |
|
|
418.0 | [0..1] | [625..1] |
|
Region A: Residues: [1-132] |
1 11 21 31 41 51
| | | | | |
1 MFYSEAILSK KGPLAKVWLA AHWEKKLSKV QTLHTSIEQS VHAIVTEETA PMALRLSGQL 60
61 MLGVVRIYSR KARYLLEDCT EALMRLKMSF QPGQVDMIEP ATALQSLKGK DAVTQSANLT 120
121 LPETITEFDL LV
|
| Detection Method: |  |
| Confidence: | 64.130768 |
| Match: | PF04825.4 |
| Description: | No description for PF04825.4 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.831 | 0.038 | double-strand break repair via homologous recombination | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
|
Region A: Residues: [133-319] |
1 11 21 31 41 51
| | | | | |
1 PDSTFDFQWS QLLRTPSRSS NTLELHSLPI SSSPSFPSSQ LSIEAGRNAQ VESGFSLGES 60
61 FAHVGNDMQF HLPISNSGAA TPRSVHSDNQ SQISIEVGRD APAAAATDLS GIIGPQMTKS 120
121 PASSVTHFST PSMLPIGGTS LDDELLAPVD DLNLDLGLDD LLGDEQGANA PAIEADEQAE 180
181 TSSIHLP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [320-465] |
1 11 21 31 41 51
| | | | | |
1 SDIMEDDSSR PAAAGVEEGQ VVESATAPQQ EKINPQKTVR RQRAIIDPVT ELSSKQMKKQ 60
61 LADTSSITSP LCLNTSSIVF NATVNFTRNG KFNTSIFSSN LNPKVNELLQ ADFKQAILRK 120
121 RKNESPEEVE PAKHQRTDTS TENQET
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [466-628] |
1 11 21 31 41 51
| | | | | |
1 AEVLDPEEIA AAELANITEA AIATLPQETV VQPEGEAPEL GSPMGFPVTA LESADDSLFD 60
61 APPVMLDEAD LLGSERLDSS VSEALPSSQT AKDSLRNKWD PYTEGEKVSF QTLSAGCNRE 120
121 EAVQLFFDVL VLATKDVISV KQDVAIQNEI TLTAKRGMLL SSL
|
| Detection Method: | |
| Confidence: | 10.045757 |
| Match: | 1w1wE |
| Description: | Sc Smc1hd:Scc1-C complex, ATPgS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.74762577068811 | bayes_pls_golite062009 |
| DNA binding | 3.6691593040775 | bayes_pls_golite062009 |
| nucleic acid binding | 3.56696430931691 | bayes_pls_golite062009 |
| binding | 3.33026160538031 | bayes_pls_golite062009 |
| transcription factor activity | 2.86565145658031 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.56454590328755 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.38449475025903 | bayes_pls_golite062009 |
| transcription activator activity | 1.36544833032097 | bayes_pls_golite062009 |
| transcription repressor activity | 1.22911517186886 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.71350728967175 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.697234220778482 | bayes_pls_golite062009 |
| protein binding | 0.653872239015235 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.349632742873003 | bayes_pls_golite062009 |
| DNA helicase activity | 0.300899564141452 | bayes_pls_golite062009 |
