| Protein: | csn3 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 334 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for csn3.
| Description | E-value | Query Range |
Subject Range |
|
|
308.0 | [0..12] | [325..141] |
|
|
308.0 | [0..12] | [325..148] |
|
|
303.0 | [0..12] | [325..144] |
|
|
302.0 | [0..12] | [325..144] |
|
|
302.0 | [0..17] | [325..170] |
|
|
302.0 | [0..17] | [325..190] |
|
|
300.0 | [0..14] | [334..168] |
|
|
299.0 | [0..13] | [334..143] |
|
Region A: Residues: [1-131] |
1 11 21 31 41 51
| | | | | |
1 MEFQGTLPFH PLEDPETLLL KFTDFVHQHS VEQCNQLSMY IIASVNSLAE AFYGSHPEKY 60
61 NIVFQSVEYA AHSPAISVMH VCYLKELLRQ GQYATSLKSF NDLEVSKHIP GSILLQYCMY 120
121 AAYHCLGNND L
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [132-241] |
1 11 21 31 41 51
| | | | | |
1 DSAKVWYFSI LYIPTTTLTS FHEEAYYSFL LLYIITTGKK FQLDSATSSN VLPLKRHMVP 60
61 YEEFLDAYLK DVNTLRTVIK EHWSRFLKDN STAFILFALE VYPMHRLKKW
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.503 | 0.918 | cytosol | a.1.1 | Globin-like |
|
Region A: Residues: [242-334] |
1 11 21 31 41 51
| | | | | |
1 RKTFSSLKLE YIAKQLAISQ DVAKEIIQKF DNKTNFTVAN GEIFLTFNAL DDVSPEMHSD 60
61 LCQQLIEASK NFEASIRLKS VIYSKIMAKK LNA
|
| Detection Method: | |
| Confidence: | 9.522879 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.76121492612224 | bayes_pls_golite062009 |
| DNA binding | 4.45042383195146 | bayes_pls_golite062009 |
| nucleic acid binding | 4.3254009446371 | bayes_pls_golite062009 |
| transcription factor activity | 3.7855017556511 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.23304004014963 | bayes_pls_golite062009 |
| transcription activator activity | 2.05043065144612 | bayes_pls_golite062009 |
| transcription repressor activity | 1.93737634607471 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.27763700765562 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.23862224095769 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.12147035668008 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.754042916649094 | bayes_pls_golite062009 |
| protein binding | 0.753698599635855 | bayes_pls_golite062009 |
| transcription factor binding | 0.612315945412079 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.249771970501337 | bayes_pls_golite062009 |
| hydrolase activity | 0.140191206949582 | bayes_pls_golite062009 |
| transferase activity | 0.064832527337659 | bayes_pls_golite062009 |
