| Protein: | cdt1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 444 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdt1.
| Description | E-value | Query Range |
Subject Range |
|
|
778.0 | [0..1] | [444..1] |
|
Region A: Residues: [1-284] |
1 11 21 31 41 51
| | | | | |
1 MKCRALYSHD NNILIFGFCV QIMSAGSQTK LNFSVRKTRS SSKRSNAAII EPPKNPEDSQ 60
61 IIPAVKRLKE NLDTESLEQN EVLPPVKNES VLFLEKVFNA VDICVKFHLS INTKPTFVLL 120
121 ENKVSGLTKI SLKITHLAQI LTVWPESFAI TPCFTIHQGK RVATYELSYP RNANLPEAFS 180
181 RSIEFKRRLE KWLLEHCSET EIPAQQLQAL PSLSKNTVNE SSLVRKLNLE KSTSRELRIP 240
241 TQTLEPKFTT NTAKYANELV SCSMLDSSST LSKSVNSKIN LKSH
|
| Detection Method: |  |
| Confidence: | 5.12 |
| Match: | 1wlqC |
| Description: | Strucure of Geminin-Cdt1 complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.98098149944065 | bayes_pls_golite062009 |
| DNA binding | 4.60314587965928 | bayes_pls_golite062009 |
| nucleic acid binding | 4.41560500044233 | bayes_pls_golite062009 |
| transcription factor activity | 3.83751005834021 | bayes_pls_golite062009 |
| transcription repressor activity | 3.4177129498808 | bayes_pls_golite062009 |
| binding | 3.37660003833383 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.84400558797599 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.21432668306508 | bayes_pls_golite062009 |
| transcription activator activity | 2.05647866476552 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.28362954833504 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.815066484495067 | bayes_pls_golite062009 |
| transcription factor binding | 0.732240481554495 | bayes_pls_golite062009 |
| protein binding | 0.726445167461826 | bayes_pls_golite062009 |
| specific transcriptional repressor activity | 0.532564808675204 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.437617796040738 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.125572630057905 | bayes_pls_golite062009 |
|
Region A: Residues: [285-444] |
1 11 21 31 41 51
| | | | | |
1 QSSSSVQNSS RKLTSSQLTL RQSSLFDRVR KKQKAMEAKK AEEFKNNLVV HTLAKEKVSF 60
61 VRIIDLIFVQ LSTWPTKRSF SMSEIVTSMQ MSISSSLSPD QCAKAIELLS KALPAWCTIN 120
121 LLGNIQVVTF SRIVNGKPYL RSQLIEELQT KASITILSNS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
