| Protein: | cdc5 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 757 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdc5.
| Description | E-value | Query Range |
Subject Range |
|
|
565.0 | [0..1] | [751..1] |
|
|
560.0 | [0..1] | [756..107] |
|
|
544.0 | [0..1] | [756..1] |
|
|
541.0 | [0..1] | [756..26] |
|
|
534.0 | [0..1] | [752..87] |
|
|
531.0 | [0..1] | [756..1] |
|
|
531.0 | [0..1] | [756..1] |
|
|
531.0 | [0..1] | [751..1] |
|
|
529.0 | [0..1] | [756..31] |
|
Region A: Residues: [1-118] |
1 11 21 31 41 51
| | | | | |
1 MVVLKGGAWK NTEDEILKAA VSKYGKNQWA RISSLLVRKT PKQCKARWYE WIDPSIKKTE 60
61 WSREEDEKLL HLAKLLPTQW RTIAPIVGRT ATQCLERYQK LLDDLEAKEN EQLGLISG
|
| Detection Method: |  |
| Confidence: | 33.69897 |
| Match: | 1h88C |
| Description: | c-Myb, DNA-binding domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| RNA binding | 2.55617811004485 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.26183812259792 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.14886080629275 | bayes_pls_golite062009 |
| chromatin binding | 1.04132983826241 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.810065362108106 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.2679415219517 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
|
Region A: Residues: [119-352] |
1 11 21 31 41 51
| | | | | |
1 EGAEAAAPVN DPNSRLRFGE AEPNLETLPA LPDAIDMDED EKEMLSEARA RLANTQGKKA 60
61 KRKDREKQLE LTRRLSHLQK RRELKAAGIN IKLFRRKKNE MDYNASIPFE KKPAIGFYDT 120
121 SEEDRQNFRE KREADQKIIE NGIRNNEMES EGRKFGHFEK PKPIDRVKKP NKDAQEEKMR 180
181 RLAEAEQMSK RRKLNLPSPT VSQDELDKVV KLGFAGDRAR AMTDTTPDAN YSTN
|
| Detection Method: | |
| Confidence: | 3.522879 |
| Match: | 2i1jA |
| Description: | No description for 2i1jA was found. |
|
Region A: Residues: [353-430] |
1 11 21 31 41 51
| | | | | |
1 LLGKYTQIER ATPLRTPISG ELEGREDSVT IEVRNQLMRN REQSSLLGQE SIPLQPGGTG 60
61 YTGVTPSHAA NGSALAAP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [431-757] |
1 11 21 31 41 51
| | | | | |
1 QATPFRTPRD TFSINAAAER AGRLASEREN KIRLKALREL LAKLPKPKND YELMEPRFAD 60
61 ETDVEATVGV LEEDATDRER RIQERIAEKE RLAKARRSQV IQRDLIRPSV TQPEKWKRSL 120
121 ENEDPTANVL LKEMIALISS DAINYPFGNS KVKGTANKVP DLSNEEIERC RLLLKKEIGQ 180
181 LESDDYIQFE KEFLETYSAL HNTSSLLPGL VIYEEDDEDV EAAEKFYTND IQRDLAKKAL 240
241 ECNKLENRVY DLVRSSYEQR NFLIKKISHA WKALQTERKN LTCYEFLYNQ ERLALPNRLE 300
301 AAEIELSKMQ QIEAYAQQDY ARVTGQN
|
| Detection Method: | |
| Confidence: | 5.69897 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
