| Protein: | cdc10 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 767 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdc10.
| Description | E-value | Query Range |
Subject Range |
|
|
354.0 | [0..49] | [696..5] |
|
|
325.0 | [0..49] | [695..37] |
|
|
320.0 | [0..23] | [664..853] |
|
|
319.0 | [0..63] | [674..188] |
|
Region A: Residues: [1-131] |
1 11 21 31 41 51
| | | | | |
1 MASANFIRQF ELGNDSFSYQ KRPEDEPSQP LSNRNINKLN DSSTLKDSSS RIFINSQVLR 60
61 DGRPVELYAV ECSGMKYMEL SCGDNVALRR CPDSYFNISQ ILRLAGTSSS ENAKELDDII 120
121 ESGDYENVDS K
|
| Detection Method: |  |
| Confidence: | 19.30103 |
| Match: | 1l3gA |
| Description: | DNA-binding domain of Mlu1-box binding protein MBP1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [132-511] |
1 11 21 31 41 51
| | | | | |
1 HPQIDGVWVP YDRAISIAKR YGVYEILQPL ISFNLDLFPK FSKQQQIESS SISKNLNTSS 60
61 FNTRSPLRNH NFSNPSKSSK NGVHTINNMQ SSPSPSSSFL LPLTQIDSQN VKRSNNYLST 120
121 SPPILEQRLK RHRIDVSDED LHPSSQLNDN EASSLFPDTP RLNHSLSFVS LVSSLPPLDQ 180
181 NIMQDYHTSK DILTSIFLDV NFADSSALEA KLSDSLDLDV PIDELGHAAL HWAAAVAKMP 240
241 LLQALIHKGA NPLRGNLTGE TALMRSVLVT NHLNQNSFGD LLDLLYASLP CTDRAGRTVV 300
301 HHICLTAGIK GRGSASRYYL ETLLNWAKKH ASGNNGYMLK DFINYLNHQD KNGDTALNIA 360
361 ARIGNKNIVE VLMQAGASAY
|
| Detection Method: | |
| Confidence: | 66.045757 |
| Match: | 1n11A |
| Description: | Ankyrin-R |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 2.69918165732603 | bayes_pls_golite062009 |
| binding | 2.60916417202222 | bayes_pls_golite062009 |
| transcription regulator activity | 2.37103377984038 | bayes_pls_golite062009 |
| nucleic acid binding | 1.8957142857582 | bayes_pls_golite062009 |
| DNA binding | 1.78305438715057 | bayes_pls_golite062009 |
| transcription activator activity | 1.6418915400902 | bayes_pls_golite062009 |
| transcription repressor activity | 1.57265102061447 | bayes_pls_golite062009 |
| transcription factor activity | 1.2667825651547 | bayes_pls_golite062009 |
| transcription factor binding | 1.06366405671195 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.949906091645366 | bayes_pls_golite062009 |
| cyclin-dependent protein kinase regulator activity | 0.68541709976608 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.590503097160372 | bayes_pls_golite062009 |
| protein kinase regulator activity | 0.576422771673579 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.56201598804914 | bayes_pls_golite062009 |
| kinase regulator activity | 0.4228431685549 | bayes_pls_golite062009 |
|
Region A: Residues: [512-767] |
1 11 21 31 41 51
| | | | | |
1 IPNRAGLSVA NFGIFVENAL KQPEDSKQTK VSLMSENLSS KEKTAVPPRQ KSRDIIASVT 60
61 DVISSLDKDF QDEMAAKQSM IDSAYTQLRE STKKLSDLRE QLHVSETQRT LFLELRQRCK 120
121 NLMTSIEEQK SELSNLYESF DPNGIHDSLS LDADAPFTVN ENNNKNLSIA ELKFQVAAYE 180
181 RNEARLNELA NKLWQRNSNI KSKCRRVVSL CTGVDESRVD SLLESLLQAV ESDGQQGEVD 240
241 MGRVAGFLRV VKEHQA
|
| Detection Method: | |
| Confidence: | 10.0 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
