| Protein: | pcm-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1612 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pcm-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
1626.0 | [0..1] | [1577..1] |
|
Region A: Residues: [1-451] |
1 11 21 31 41 51
| | | | | |
1 MGVPKFFRYI SERYPCLSEL AREHCIPEFD NLYLDMNGIV HNCSHPDDNN IHFHLEEEQI 60
61 FQEIFNYVDK LFYLIKPQRL FFLSVDGVAP RAKMNQQRSR RFRTAREAEQ QEAKAAQRGE 120
121 LREHERFDSN CITPGTEFMV RLQEGLRAFL KTKISTDPLW QRCTVILSGQ EAPGEGEHKI 180
181 MDYIRYMKTQ PDYDPNTRHC LYGLDADLII LGLCTHELHF VVLREEVKFG RNVKRTSVEE 240
241 TRFFLLHLGL LREYLELEFD ALRTDEHKLD IAQLIDDWVL MGFLVGNDFI PHLPCLHISS 300
301 NALPLLYRTY IGIYPTLGGN INENGKLNLR RLQIFISALT EVELDHFKEH ADDLKYMNNK 360
361 SEAFDMDVGE ITESQNLDSD LGALINKSML LYDDDSEEDC SDENAVLLKE FQNYKRNFYR 420
421 NKFKRDPNDE LIEELCHHYV NALQWVLDYY Y
|
| Detection Method: |  |
| Confidence: | 1.85 |
| Match: | 1ul1X |
| Description: | Crystal structure of the human FEN1-PCNA complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| endonuclease activity | 2.45869331497094 | bayes_pls_golite062009 |
| hydrolase activity | 2.24171130786956 | bayes_pls_golite062009 |
| binding | 1.99360183638569 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 1.96755600188402 | bayes_pls_golite062009 |
| nucleic acid binding | 1.68917463278047 | bayes_pls_golite062009 |
| DNA binding | 1.63116261448437 | bayes_pls_golite062009 |
| nuclease activity | 1.55313849436792 | bayes_pls_golite062009 |
| exonuclease activity | 1.29727662049967 | bayes_pls_golite062009 |
| catalytic activity | 1.27951740231695 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 1.12391156671522 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 1.11025090301954 | bayes_pls_golite062009 |
| ribonuclease activity | 0.974421387546058 | bayes_pls_golite062009 |
| flap endonuclease activity | 0.405877291452351 | bayes_pls_golite062009 |
| protein binding | 0.388252010955945 | bayes_pls_golite062009 |
| 5'-3' exonuclease activity | 0.371408632109349 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.237820137780736 | bayes_pls_golite062009 |
| ribonuclease H activity | 0.234391225960316 | bayes_pls_golite062009 |
| endoribonuclease activity | 0.097472492148219 | bayes_pls_golite062009 |
|
Region A: Residues: [452-611] |
1 11 21 31 41 51
| | | | | |
1 RGVQSWDWYY PFHYTPFISD LKNIEQVEIA FHMGTPFLPF QQLLAVLPAA SAKLLPVAYH 60
61 DLMLLPTSPL AEFYPLEFES DLNGKKHDWE AVVLIPFIDE GRLLAAMLPC EAQLSLEERE 120
121 RNRHGPMYVY KYSTVAQGPM PAYPPLRALP VLYCTEVAKW
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [612-836] |
1 11 21 31 41 51
| | | | | |
1 SHEIAVNLPY SVCIELPNAA RTVFFPGFPT MQHLPFDFEL RNDRVKVFEQ VSRNQNIVLK 60
61 PRKRQLEDTL TAVASQYLGK VIHVGWPHLV KAIVVRVATR DQRVDSEGIT LNDSRRFDSE 120
121 CKALQEHFIN RMGIQFANYD VLVYVRTFAG NSTEFRDKGA LMVRDSWSSS VTGYPAQGVV 180
181 ADLTVWERMR KNFLNVEHYF PVGSTIFLIT DPYYGSEGTV QDPRL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [837-1011] |
1 11 21 31 41 51
| | | | | |
1 AYTNGRIQVS IMVRPEPKVN AARQLQEERD RDYLSTFQVC NLLRISGRTL GRLSGTVWVV 60
61 LGPRRQKMEN VTKHNIGLQL KYPRQNEERA GYCFRTNNQW YYSSLAVDLM RNYCQRYPDV 120
121 IDFFGDSNDR AEFVFEQDVF PNAVGHRRVE ELANWVRQQP HMKVERISCG SKTVC
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1012-1612] |
1 11 21 31 41 51
| | | | | |
1 RETIELLIAA VDDLRSLPVK HVKLQVKPHL LIKPNVTLPD VYRSKRPVRL FDRVVIVRTI 60
61 YMVPVGTKGT VIGIHPVTDP NPVRLECVHA VDTFCKVLFD SPVPNCNNIH GIAEDRVYKV 120
121 PEIALVIIKT DEEGKKQNDC ELPVRDPQPN QAQDEPVRAT SSRYVTAAGS TSVPITMKTQ 180
181 ISDEFVKTRS DPIARTDSYK PSSEPKPVPV PEQITNWRER VSTPTNKPQP APNNWRINRS 240
241 SSRQQGGSIF VAPPTKTPDA AASTASTAFT AASSATLTPL DQTLALMSVL GVGEDQSSPP 300
301 LQEAVQQQRP PLLQQQRAPF PGQMPNLPKP PLFWQQEAQK QEALQQEAQQ QEAQKKQQQA 360
361 HAQMEPERIN SQHFYRSGQT GAALNQPPLG APSKRQWHEW VHPRMQHANA FHAGVNNGYQ 420
421 MRPKKNIAAQ STFNNNVHMH LQQPYYPNQQ QQQQQQQPLQ LTEINNAPPR YSTIQDFVPI 480
481 QAYRPKKLNR VQPAGRQDVD ATKNPSRSPV LQQPTNETID TKASSSLPVQ SAGEQVIGLM 540
541 QTLEIKPAAS QSESDGVSTG SANAPTATTS SQAVNRRKHR VPRIGAKFDL EYILPDSPHP 600
601 T
|
| Detection Method: | |
| Confidence: | 8.39794 |
| Match: | 1y0fA |
| Description: | No description for 1y0fA was found. |
