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View Structure Prediction Details

Protein: FBpp0311888, mRp...
Organism: Drosophila melanogaster
Length: 128 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0311888, mRp....

Description E-value Query
Range
Subject
Range
gi|57088973 - gi|57088973|ref|XP_537182.1| PREDICTED: similar to mitochondrial ribosomal protein S14 [Canis famili...
147.0 [0..2] [128..4]

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Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLARIGGF VCQSVQIAGC GLQQVRTKYA DWKMIRDVKR RKCVKENAVE RLRVNSLRKN  60
   61 DILPPELREV ADAEIAAFPR DSSLVRVRER CALTSRPRGV VHKYRLSRIV WRHLADYNKL 120
  121 SGVQRAMW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.0
Match: 1vs5N
Description: No description for 1vs5N was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 6.46626105355287 bayes_pls_golite062009
structural molecule activity 5.9950507001335 bayes_pls_golite062009
binding 2.38688645545392 bayes_pls_golite062009
transcription regulator activity 2.06638295156835 bayes_pls_golite062009
nucleic acid binding 1.86905163192306 bayes_pls_golite062009
DNA binding 1.86136246408845 bayes_pls_golite062009
general RNA polymerase II transcription factor activity 1.85717131429984 bayes_pls_golite062009
protein binding 1.60194768638501 bayes_pls_golite062009
transcription factor activity 1.28200214216555 bayes_pls_golite062009
transcription factor binding 1.02376991656046 bayes_pls_golite062009
sequence-specific DNA binding 0.48169971060149 bayes_pls_golite062009
transcription activator activity 0.42927665410421 bayes_pls_golite062009
RNA polymerase II transcription factor activity 0.33193976709857 bayes_pls_golite062009
transcription cofactor activity 0.29526103320546 bayes_pls_golite062009
ligand-dependent nuclear receptor activity 0.27479486808555 bayes_pls_golite062009
catalytic activity 0.101795606736461 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle