| Protein: | FBpp0309323 |
| Organism: | Drosophila melanogaster |
| Length: | 384 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0309323.
| Description | E-value | Query Range |
Subject Range |
|
|
281.0 | [0..61] | [379..2532] |
|
Region A: Residues: [1-67] |
1 11 21 31 41 51
| | | | | |
1 MEYLYNASMH CEDEERVNFY NMDKFFVPHV QSIELEQQAI LRQYVPQYAY QWPWGFAPSA 60
61 YSYYQGF
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [68-179] |
1 11 21 31 41 51
| | | | | |
1 GSLNMMTMDI TKTEPGLVGL SSNQQQQQQQ QSQQSNAGMN SGGQNNGPNP NGNGNVVNVV 60
61 NSGGAGGGNN GNGNVQSIAA AANNNNNNNN NGSQLCAGCG KHIQDRYLLR AL
|
| Detection Method: | |
| Confidence: | 10.522879 |
| Match: | 1meyC |
| Description: | Designed zinc finger protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [180-277] |
1 11 21 31 41 51
| | | | | |
1 DMLWHEDCLK CGCCDCRLGE VGSTLYTKGN LMLCKRDYLR LFGNTGYCAA CSKVIPAFEM 60
61 VMRARTNVYH LECFACQQCN HRFCVGDRFY LCENKILC
|
| Detection Method: | |
| Confidence: | 27.69897 |
| Match: | 2dfyX |
| Description: | No description for 2dfyX was found. |
|
Region A: Residues: [278-384] |
1 11 21 31 41 51
| | | | | |
1 EYDYEERLVF ASMANHPMLK RHVSSLGQGS PTGAAGAQNT AGGLLGGGPG GGNVNGVGMV 60
61 NGPRTPGDHN NNNNGPQTPT GGGSPFAAAA AAAAAAAHMK NQLGASS
|
| Detection Method: | |
| Confidence: | 5.39794 |
| Match: | 2cuqA |
| Description: | Solution Structure of Second Lim Domain from Human Skeletal Muscle Lim-Protein 2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.00967542385368 | bayes_pls_golite062009 |
| DNA binding | 3.60745514727532 | bayes_pls_golite062009 |
| nucleic acid binding | 3.47256374293954 | bayes_pls_golite062009 |
| binding | 2.96409924710655 | bayes_pls_golite062009 |
| transcription activator activity | 2.9532663930699 | bayes_pls_golite062009 |
| transcription factor activity | 2.90769972671972 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.72967350701574 | bayes_pls_golite062009 |
| protein binding | 2.44501340584871 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.40923942043513 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.49515149729803 | bayes_pls_golite062009 |
| transcription factor binding | 1.38523780690867 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.26452462867497 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.68943696300126 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.58115018700114 | bayes_pls_golite062009 |
| transcription repressor activity | 0.256420113528322 | bayes_pls_golite062009 |
| catalytic activity | 0.101795606736461 | bayes_pls_golite062009 |
