| Protein: | Cbp80-PA, Cbp80-PB |
| Organism: | Drosophila melanogaster |
| Length: | 800 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cbp80-PA, Cbp80-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
1139.0 | [0..1] | [800..122] |
|
Region A: Residues: [1-800] |
1 11 21 31 41 51
| | | | | |
1 MSRRRAHDTE DEGYDHRRNK RRRVSENQEI EDRLESLILR VGERSTSSVE SNLEGLVSVL 60
61 EADLGTFRLK ILRILSDCAV RMPEKCTVYT TLVGLLNAKN YKFGGEFVDH MVKTFKESLK 120
121 MCRWDAARYS LRFLADLVNC HVISATSLLQ LLDTMIDVSN EDTVPQVRRD WFVFAVLSTL 180
181 PWVGRDLYEK KESALESLLL RIEVYLNKRS KKHHNALRVW SSDAPHPQEE YLDCLWAQIR 240
241 KLRQDNWAEK HIPRPYLVFD SILCEALQHN LPTIVPPPHH DNFEYPMPWV VYRMFDYTDC 300
301 PDGPNLPGAH SIERFLIEEH LHHIIETYHH ERKDCAAQLL SFPYKHKIPL EYCIVEVVFA 360
361 ELFHMPTPRY LDICYGSILI ELCKLQPATL PQVLAQATEI LFMRIDSMNT SCFDRFVNWF 420
421 SYHLSNFKFT WSWDEWDSCL LLDGEHPRPK FIQEVLQKCL RLSYHQRITE MMPTTYAKLI 480
481 PLTPVPNYKY ANEEAANLPG TTVAHQLVVA IRQKCTPEEV VNILKDIPNS GYSGEEMSDG 540
541 SFNALKIDVF VQTLLNLGSK SFSHSFAAIS KFHSVFRALA ETEEAQICIL HNIFELWSSH 600
601 QQMMVVLIDK LLKLQIVDCS AVATWIFSKE MTGEFTKLYL WEILHLTIKK MNKHVIKLNT 660
661 ELSEAKEKLA KADSSSSDSE DDSSHKRKKP ITHADKPSEE VVERMEEKLE AANVNQKRLF 720
721 LIVFQRFIMI LSEHLLRSDT DGRDPDTDWY RWTIGRLQQV FLMHHEQVQK YSSTLETLLF 780
781 TSDLDTHILE VFQQFVALRA
|
| Detection Method: |  |
| Confidence: | 1000.0 |
| Match: | 1n52A |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA cap binding | 6.31996430626206 | bayes_pls_golite062009 |
| binding | 3.0667965351474 | bayes_pls_golite062009 |
| protein binding | 2.78733902345842 | bayes_pls_golite062009 |
| nucleic acid binding | 2.74745843355294 | bayes_pls_golite062009 |
| RNA binding | 2.62683106046883 | bayes_pls_golite062009 |
| transcription regulator activity | 1.90912542848632 | bayes_pls_golite062009 |
| DNA binding | 1.77040152722002 | bayes_pls_golite062009 |
| transcription activator activity | 1.33885628961586 | bayes_pls_golite062009 |
| transcription factor activity | 1.27944481949335 | bayes_pls_golite062009 |
| mRNA binding | 1.24616647164637 | bayes_pls_golite062009 |
| RNA 7-methylguanosine cap binding | 0.841392474686331 | bayes_pls_golite062009 |
| transcription factor binding | 0.00210118982863072 | bayes_pls_golite062009 |
