| Protein: | vnd-PA |
| Organism: | Drosophila melanogaster |
| Length: | 723 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vnd-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
221.0 | [0..1] | [723..1] |
|
Region A: Residues: [1-99] |
1 11 21 31 41 51
| | | | | |
1 MTTSASLERT PSKRDRDRER DNSSGLGSAG SLPASPQSAI TVSPSSPATP KRPLRTSTPS 60
61 LERKREREDR EDREDRKERQ ERHERDRDHE RFAAVFSTA
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [100-244] |
1 11 21 31 41 51
| | | | | |
1 STTVPTNTSS SSGLAPEQLR IPTGAAAFSG FPGLHSMSSL MLPSSAAVAA AAAAPFLPWS 60
61 PILLPPWNHA LLPAAFYPAA LRNALPGLFD AKVPSSQRSG FHISDILNLE GSELKNAAAA 120
121 AAAAAHHGSD LSHHSASEST SGHRG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [245-410] |
1 11 21 31 41 51
| | | | | |
1 QGSHTSPSAL SPTPAGVSAD EHHNGSGTGG GAGEADHHST TEHHAPPSHP QQQHPHHQQH 60
61 HHPHLLLPQQ HHQQAVAPLP LAHHQSGEAQ SHAHANAAAA HLLASHNAAA AAAVAAGQYL 120
121 PNLPKNFPGS FGDEMSSYHH MAQTMLQHSG RSAWIKENEL YGTQQP
|
| Detection Method: | |
| Confidence: | 5.0 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.5139760613123 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| transcription activator activity | 3.10621734076555 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| protein binding | 1.88087411289001 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.33505905753956 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.2679415219517 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
|
Region A: Residues: [411-543] |
1 11 21 31 41 51
| | | | | |
1 ASPDSTSPVT SEVSYTYIGS NCQTSPALSG DYKSYSRSAD SDALSVGDAL HTLHGSSGNG 60
61 SAGGAPTAHA LHNNNNNTTN NNNHSLKAEG INGAGSGHDD SLNEDGIEED IDDVDDADGS 120
121 GGGDANGSDG LPN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [544-619] |
1 11 21 31 41 51
| | | | | |
1 KKRKRRVLFT KAQTYELERR FRQQRYLSAP EREHLASLIR LTPTQVKIWF QNHRYKTKRA 60
61 QNEKGYEGHP GLLHGH
|
| Detection Method: | |
| Confidence: | 11.221849 |
| Match: | 1nk2P |
| Description: | VND/NK-2 protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.5139760613123 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| transcription activator activity | 3.10621734076555 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| protein binding | 1.88087411289001 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.33505905753956 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.2679415219517 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
|
Region A: Residues: [620-723] |
1 11 21 31 41 51
| | | | | |
1 ATHPHHPSAL PSPRRVAVPV LVRNGKPCLG DSSKLGADCV SVSSATATAM QNAAAHHLVA 60
61 LNGAAAYQHA AAAAAGLHAH AHAHAHAHGH GHPHAHAQRA AWWP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
