| Protein: | Sox100B-PA |
| Organism: | Drosophila melanogaster |
| Length: | 529 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Sox100B-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
177.0 | [0..9] | [145..25] |
|
Region A: Residues: [1-81] |
1 11 21 31 41 51
| | | | | |
1 MSDSSSSNCS KDRAKPVETL VLANYALKAE QKKAQGQGGR KEDERITTAV MKVLEGYDWN 60
61 LVQASAKAPT DRKKEHIKRP M
|
| Detection Method: |  |
| Confidence: | 12.221849 |
| Match: | 1aabA |
| Description: | NMR STRUCTURE OF RAT HMG1 HMGA FRAGMENT |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA binding | 5.15324651287773 | bayes_pls_golite062009 |
| transcription regulator activity | 4.9607192917135 | bayes_pls_golite062009 |
| nucleic acid binding | 4.70730250099648 | bayes_pls_golite062009 |
| transcription factor activity | 3.82658263870186 | bayes_pls_golite062009 |
| binding | 3.6211482127468 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.96229555092695 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.84606709725198 | bayes_pls_golite062009 |
| transcription activator activity | 1.62744929149746 | bayes_pls_golite062009 |
| transcription repressor activity | 1.53825678633232 | bayes_pls_golite062009 |
| protein binding | 1.131658134984 | bayes_pls_golite062009 |
| transcription factor binding | 1.10315330167937 | bayes_pls_golite062009 |
| DNA bending activity | 0.87985209274756 | bayes_pls_golite062009 |
| chromatin binding | 0.830960835937769 | bayes_pls_golite062009 |
|
Region A: Residues: [82-235] |
1 11 21 31 41 51
| | | | | |
1 NAFMVWAQAA RRVMSKQYPH LQNSELSKSL GKLWKNLKDS DKKPFMEFAE KLRMTHKQEH 60
61 PDYKYQPRRK KARVLPSQQS GEGGSPGPEM TLSATMGSSG KPRSSNSNGQ RRAGKGNAAA 120
121 DLGSCASTIS HANVGSNSSD VFSNEAFMKS LNSA
|
| Detection Method: | |
| Confidence: | 26.0 |
| Match: | 2gzkA |
| Description: | No description for 2gzkA was found. |
| Term | Confidence | Notes |
| DNA binding | 5.15324651287773 | bayes_pls_golite062009 |
| transcription regulator activity | 4.9607192917135 | bayes_pls_golite062009 |
| nucleic acid binding | 4.70730250099648 | bayes_pls_golite062009 |
| transcription factor activity | 3.82658263870186 | bayes_pls_golite062009 |
| binding | 3.6211482127468 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.96229555092695 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.84606709725198 | bayes_pls_golite062009 |
| transcription activator activity | 1.62744929149746 | bayes_pls_golite062009 |
| transcription repressor activity | 1.53825678633232 | bayes_pls_golite062009 |
| protein binding | 1.131658134984 | bayes_pls_golite062009 |
| transcription factor binding | 1.10315330167937 | bayes_pls_golite062009 |
| DNA bending activity | 0.87985209274756 | bayes_pls_golite062009 |
| chromatin binding | 0.830960835937769 | bayes_pls_golite062009 |
|
Region A: Residues: [236-349] |
1 11 21 31 41 51
| | | | | |
1 CAASLMEQSL IETGLDSPCS TASSMSSLTP PATPYNVAPS NAKASAANNP SLLLRQLSEP 60
61 VANAGDGYGV LLEAGREYVA IGEVNYQGQS AGVQSGAEGG GAGQEMDFLE NING
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [350-529] |
1 11 21 31 41 51
| | | | | |
1 YGGYTGSRVS YPAYSYPANG GHFATEEQQQ QQALQASEAL NYKPAAADID PKEIDQYFMD 60
61 QMLPMTQHHH PHHTHPLHHP LHHSPPLNSS ASLSSACSSA SSQQPVAEYY EHLGYSPAAS 120
121 SASQNPNFGP QQPYANGAAS MTPTLGDPAP QQELQSQQQE QQHQNPSQHH LWGTYTYVNP 180
181
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
