| Protein: | gi|24650134, gi|... |
| Organism: | Drosophila melanogaster |
| Length: | 883 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24650134, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
666.0 | [0..2] | [883..146] |
|
Region A: Residues: [1-796] |
1 11 21 31 41 51
| | | | | |
1 MGRIWCLLFV SSLLHTQSQS FRVLAINEAT CSSDQFRCGN GNCIPNKWRC DQESDCADGS 60
61 DEANELCRAR TCSPDEYACK SGEGQCVPLA WMCDQSKDCS DGSDEHNCNQ TCRADEFTCG 120
121 NGRCIQKRWK CDHDDDCGDG SDEKECPVVP CDSVAEHTCT NGACIAKRWV CDGDPDCSDG 180
181 SDERSCANVT KTTTPCLSHE YQCKDRITCL HHSWLCDGDR DCPDGDDEHT ANCKNVTCRA 240
241 DQFQCGDRSC IPGHLTCNGD KDCADGSDER DCGLSLSLGI NQGGCNATSE FDCGGGQCVP 300
301 LSKVCDKRKD CPDGEDEPAG KCGINECASK NGGCMHQCID LKVGHHCECH EGYKLSPDKR 360
361 NCQDINECEV PGKCSQICVN EIGGFKCECE AGYMRDPKNH TRCKASEGHA SLLLARRHDI 420
421 RKIALDHMEM TSIVNSTKAA TALDFVFRTG MIFWSDVTTQ SIYKAPIDEG NEKTVVLTKS 480
481 SVTSDGLAVD WIYNHVYFTD THKCTIELTN FEGSMGKVLV KDSLDIPRSI ALDPIEGWMY 540
541 WSDWGASPRI ERAGMDGSHR TTIISYDVKW PNGITLDLVK KRIYWVDGKL NVISSANYDG 600
601 SQRSQVLYSG EYLRHPFSIT TFEDNVYWTD WDKQAVFKAN KFTGEDVEPV TAMHMLQHPM 660
661 VVHVYHPYRQ PDGVNHCQSV NGHCSHLCLP APRINERSPR ISCACPTGLK LMVDGLMCVE 720
721 DLTRPPRARK TKPRPKSPRR RLPTGVQVGH ADIRIEINDD LQLSTRLPLL PTTFVADQRP 780
781 VKNHTQIEKT TTPSEQ
|
| Detection Method: |  |
| Confidence: | 131.0 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| very-low-density lipoprotein receptor activity | 7.75680908341624 | bayes_pls_golite062009 |
| very-low-density lipoprotein binding | 7.75680908341624 | bayes_pls_golite062009 |
| low-density lipoprotein binding | 6.26591728596226 | bayes_pls_golite062009 |
| receptor activity | 5.18957329214193 | bayes_pls_golite062009 |
| transmembrane receptor activity | 5.12821337870369 | bayes_pls_golite062009 |
| molecular transducer activity | 4.28859337937742 | bayes_pls_golite062009 |
| signal transducer activity | 4.28859337937742 | bayes_pls_golite062009 |
| lipoprotein binding | 4.14588039269064 | bayes_pls_golite062009 |
| ErbB-2 class receptor binding | 4.1172010378646 | bayes_pls_golite062009 |
| low-density lipoprotein receptor activity | 3.65371958920557 | bayes_pls_golite062009 |
| lipoprotein receptor binding | 3.5371428063122 | bayes_pls_golite062009 |
| ErbB-3 class receptor binding | 3.52219710022937 | bayes_pls_golite062009 |
| lipoprotein receptor activity | 3.27342368855237 | bayes_pls_golite062009 |
| apolipoprotein binding | 3.15697162337516 | bayes_pls_golite062009 |
| binding | 3.10919144943954 | bayes_pls_golite062009 |
| glycosaminoglycan binding | 2.86713236325679 | bayes_pls_golite062009 |
| heparin binding | 2.49012176521764 | bayes_pls_golite062009 |
| polysaccharide binding | 2.16901652361989 | bayes_pls_golite062009 |
| transcription regulator activity | 2.16844098063599 | bayes_pls_golite062009 |
| sterol transporter activity | 2.16184949636569 | bayes_pls_golite062009 |
| apolipoprotein E binding | 2.15688766106363 | bayes_pls_golite062009 |
| protein binding | 2.11668700345827 | bayes_pls_golite062009 |
| receptor binding | 2.00382722979859 | bayes_pls_golite062009 |
| lipid transporter activity | 1.91872326766441 | bayes_pls_golite062009 |
| lipoprotein transporter activity | 1.72944996169507 | bayes_pls_golite062009 |
| transcription factor binding | 1.71838409809333 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.61057978332614 | bayes_pls_golite062009 |
| high-density lipoprotein binding | 1.52515316728946 | bayes_pls_golite062009 |
| growth factor activity | 1.52153421000803 | bayes_pls_golite062009 |
| transporter activity | 1.44005597324471 | bayes_pls_golite062009 |
| collagen binding | 1.3611207932336 | bayes_pls_golite062009 |
| protein transporter activity | 1.27232657510644 | bayes_pls_golite062009 |
| pattern binding | 1.26957983931218 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.08803800589535 | bayes_pls_golite062009 |
| protein kinase activity | 1.00235965838736 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.741912411452008 | bayes_pls_golite062009 |
| carbohydrate binding | 0.72748768329894 | bayes_pls_golite062009 |
| kinase activity | 0.692244195382463 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.67022333774569 | bayes_pls_golite062009 |
| extracellular matrix structural constituent | 0.66981956037474 | bayes_pls_golite062009 |
| cell adhesion molecule binding | 0.44857826904729 | bayes_pls_golite062009 |
| extracellular matrix binding | 0.3265100728106 | bayes_pls_golite062009 |
|
Region A: Residues: [797-883] |
1 11 21 31 41 51
| | | | | |
1 PDSGFIALVV IASLSGFAVL LSVLLLIGYR YCSKRRINSM NFENPIYRKT TTTEDHFSLR 60
61 KNLPARIYDH TSVMDEEYSP VIGISSY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
