| Protein: | dan-PA, FBpp0303321 |
| Organism: | Drosophila melanogaster |
| Length: | 678 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dan-PA, FBpp0303321.
| Description | E-value | Query Range |
Subject Range |
|
|
226.0 | [0..1] | [678..1] |
|
Region A: Residues: [1-174] |
1 11 21 31 41 51
| | | | | |
1 MNIRMGTKGK RPLRSLTPRD KIHAIQRIHD GESKASVARD IGVPESTLRG WCKNEDKLRF 60
61 MSRQSATDNL CADALGDKMD GGGGGGGGAG GGGLLGPPEK RQRLDGALPL NFSNKLKFDE 120
121 LAFKRSPLNG LDYSTNKNLA DLGYNGLPVD YAAFNGGVKA KVFGADINRP AADP
|
| Detection Method: |  |
| Confidence: | 2.11 |
| Match: | 1hlvA |
| Description: | DNA-binding domain of centromere binding protein B (CENP-B) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.86538715425734 | bayes_pls_golite062009 |
| DNA binding | 4.40186699787632 | bayes_pls_golite062009 |
| nucleic acid binding | 3.98153794570167 | bayes_pls_golite062009 |
| transcription factor activity | 3.78935192723648 | bayes_pls_golite062009 |
| binding | 2.92574888336072 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.15328641013602 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.00875399167309 | bayes_pls_golite062009 |
| transcription repressor activity | 1.69615348178304 | bayes_pls_golite062009 |
| transcription activator activity | 1.5973137667873 | bayes_pls_golite062009 |
| transcription factor binding | 1.24678737091956 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.865913662624162 | bayes_pls_golite062009 |
| protein binding | 0.795494287543952 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.691780246385357 | bayes_pls_golite062009 |
| chromatin binding | 0.65622150362507 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.0723215858239072 | bayes_pls_golite062009 |
|
Region A: Residues: [175-324] |
1 11 21 31 41 51
| | | | | |
1 SLNAISPLSS LTHLSGLTGI SQSPLAISFN ELTTNLNLLA QLNPGLAAMS GLNSFPAGAG 60
61 NLRTPKPSGQ TPLQVQSPRS DSGDRSAQGL SVKNWAKQKP GEGQGSLNLS IKNEGKGGDI 120
121 KSPSPSIAPS QMGGPMTLSN LAEDPLLYWL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [325-577] |
1 11 21 31 41 51
| | | | | |
1 KSQQTMLGLN PLYPPTIPMG VTSPPIRSST PQHMSQLAQT PPIPSAPLTP SSTPSGSLDE 60
61 KNAAWYNWCK AFGASLHTLN PNAATLAALQ ANQLQQQVAT TAAEGGSMGD PSNILYSHLT 120
121 KETETPSVRS LSSNEQNPEA DEATETDLDG EVEPEASGKP EDLSAAGKVM TPSQSPIAHS 180
181 SGSRSPEPKA KTKTPETTNS TSECKKILDN MLFKMGGMEA TGPLMPEQGS SESEGSFQDT 240
241 SNPHTNNNDV SAS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [578-678] |
1 11 21 31 41 51
| | | | | |
1 NNNNNNNSNK TDEEEKAKYL DCTADEDIEA IRHGEKFLQW LENCSNPRVT AVQLMQLRFL 60
61 IAAIKSGNET PMIEKSALPE DSEEHAAEEE GSGRGKSRRR K
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
