| Protein: | Hr96-PA |
| Organism: | Drosophila melanogaster |
| Length: | 723 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Hr96-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
307.0 | [0..299] | [723..142] |
|
Region A: Residues: [1-153] |
1 11 21 31 41 51
| | | | | |
1 MSPPKNCAVC GDKALGYNFN AVTCESCKAF FRRNALAKKQ FTCPFNQNCD ITVVTRRFCQ 60
61 KCRLRKCLDI GMKSENIMSE EDKLIKRRKI ETNRAKRRLM ENGTDACDAD GGEERDHKAP 120
121 ADSSSSNLDH YSGSQDSQSC GSADSGANGC SGR
|
| Detection Method: |  |
| Confidence: | 23.09691 |
| Match: | 2hanB |
| Description: | No description for 2hanB was found. |
| Term | Confidence | Notes |
| transcription regulator activity | 4.00967542385368 | bayes_pls_golite062009 |
| DNA binding | 3.60745514727532 | bayes_pls_golite062009 |
| nucleic acid binding | 3.47256374293954 | bayes_pls_golite062009 |
| binding | 2.96409924710655 | bayes_pls_golite062009 |
| transcription activator activity | 2.9532663930699 | bayes_pls_golite062009 |
| transcription factor activity | 2.90769972671972 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.72967350701574 | bayes_pls_golite062009 |
| protein binding | 2.44501340584871 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.40923942043513 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.49515149729803 | bayes_pls_golite062009 |
| transcription factor binding | 1.38523780690867 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.26452462867497 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.68943696300126 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.58115018700114 | bayes_pls_golite062009 |
| transcription repressor activity | 0.256420113528322 | bayes_pls_golite062009 |
| catalytic activity | 0.101795606736461 | bayes_pls_golite062009 |
|
Region A: Residues: [154-389] |
1 11 21 31 41 51
| | | | | |
1 QASSPGTQVN PLQMTAEKIV DQIVSDPDRA SQAINRLMRT QKEAISVMEK VISSQKDALR 60
61 LVSHLIDYPG DALKIISKFM NSPFNALTVF TKFMSSPTDG VEIISKIVDS PADVVEFMQN 120
121 LMHSPEDAID IMNKFMNTPA EALRILNRIL SGGGANAAQQ TADRKPLLDK EPAVKPAAPA 180
181 ERADTVIQSM LGNSPPISPH DAAVDLQYHS PGVGEQPSTS SSHPLPYIAN SPDFDL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [390-723] |
1 11 21 31 41 51
| | | | | |
1 KTFMQTNYND EPSLDSDFSI NSIESVLSEV IRIEYQAFNS IQQAASRVKE EMSYGTQSTY 60
61 GGCNSAANNS QPHLQQPICA PSTQQLDREL NEAEQMKLRE LRLASEALYD PVDEDLSALM 120
121 MGDDRIKPDD TRHNPKLLQL INLTAVAIKR LIKMAKKITA FRDMCQEDQV ALLKGGCTEM 180
181 MIMRSVMIYD DDRAAWKVPH TKENMGNIRT DLLKFAEGNI YEEHQKFITT FDEKWRMDEN 240
241 IILIMCAIVL FTSARSRVIH KDVIRLEQNS YYYLLRRYLE SVYSGCEARN AFIKLIQKIS 300
301 DVERLNKFII NVYLNVNPSQ VEPLLREIFD LKNH
|
| Detection Method: | |
| Confidence: | 41.69897 |
| Match: | 1navA |
| Description: | Thyroid hormone receptor alpha1 (TR-alpha1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.53061626347066 | bayes_pls_golite062009 |
| DNA binding | 4.92165988569962 | bayes_pls_golite062009 |
| nucleic acid binding | 4.78024150262074 | bayes_pls_golite062009 |
| transcription activator activity | 4.53302455129434 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 4.11614358606713 | bayes_pls_golite062009 |
| transcription factor activity | 4.0914094580319 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 3.89763470197726 | bayes_pls_golite062009 |
| binding | 3.85318710398432 | bayes_pls_golite062009 |
| protein binding | 3.21524787168952 | bayes_pls_golite062009 |
| transcription factor binding | 2.68044489404568 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.38308182853979 | bayes_pls_golite062009 |
| steroid hormone receptor activity | 2.30195937604451 | bayes_pls_golite062009 |
| transcription repressor activity | 2.20686235000733 | bayes_pls_golite062009 |
| receptor activity | 2.07573173722434 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.73827483890179 | bayes_pls_golite062009 |
| nuclear hormone receptor binding | 1.60419100774741 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.34794228300778 | bayes_pls_golite062009 |
| retinoic acid receptor binding | 1.28118886948947 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.23834725221597 | bayes_pls_golite062009 |
| molecular transducer activity | 1.19872119297817 | bayes_pls_golite062009 |
| signal transducer activity | 1.19872119297817 | bayes_pls_golite062009 |
| retinoid X receptor binding | 0.99801784942981 | bayes_pls_golite062009 |
| retinoic acid receptor activity | 0.853869057774515 | bayes_pls_golite062009 |
| protein dimerization activity | 0.797229273848179 | bayes_pls_golite062009 |
| hormone receptor binding | 0.74373733735458 | bayes_pls_golite062009 |
| promoter binding | 0.58091332905515 | bayes_pls_golite062009 |
| protein N-terminus binding | 0.57701453824007 | bayes_pls_golite062009 |
| thyroid hormone receptor activity | 0.49784404390361 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.45265806678057 | bayes_pls_golite062009 |
| receptor binding | 0.418843034756825 | bayes_pls_golite062009 |
| ligand-regulated transcription factor activity | 0.202197503742221 | bayes_pls_golite062009 |
| lipid binding | 0.164046651023989 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.15737167800277 | bayes_pls_golite062009 |
| catalytic activity | 0.106902059021677 | bayes_pls_golite062009 |
