| Protein: | orb-PD, orb-PB |
| Organism: | Drosophila melanogaster |
| Length: | 913 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for orb-PD, orb-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
397.0 | [0..78] | [913..80] |
|
Region A: Residues: [1-78] |
1 11 21 31 41 51
| | | | | |
1 MLGVEKPYVV EPAMAVAQDS FEFGSNGDGS STNSHTSNAS SKDLGRLTSG DGAQNFAQDS 60
61 SANSIDQDST DNTNSDCN
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [79-164] |
1 11 21 31 41 51
| | | | | |
1 PITLNDLLGL CGASTANEVV GTGQTPSTSA PILGAGGGGR ANGVTAGAAT ATGVGVGAGG 60
61 TLPGPGVPSI QGGGGGGVVG QQTNAS
|
| Detection Method: | |
| Confidence: | 1.0 |
| Match: | 2ihxB |
| Description: | No description for 2ihxB was found. |
|
Region A: Residues: [165-256] |
1 11 21 31 41 51
| | | | | |
1 CNTSAANPSA SFGGNGSSSD VNNLLLASAA AAAAAAAGDG AQLSANAAAY APLTPSSTHS 60
61 SASPGTKSNF DYFQFENVAQ SNPLKAFQRT NI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [257-443] |
1 11 21 31 41 51
| | | | | |
1 SFDCSAPLSP STPTSIYNRS FHSSPLVSDS SNSSSGIGLS MDSINMFYNQ QQQQQQPEQQ 60
61 GYTSLGNSMG SGLGLSLANA STRSNSPESQ NSSNSTTEQN LLDMINLLSV NSNKIPHQQQ 120
121 QQQQQQQQQQ QQQQQNQQQL QVQQQHQLQQ QFVNLNRNYE QQISANLGSQ QHGFEHNGVG 180
181 VGASSSG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [444-557] |
1 11 21 31 41 51
| | | | | |
1 NENCFSQYNL ENITSVDMEL AKLQNLQRIN TLKLLHAQAQ QMPLINQLLQ SYAGNAIGSV 60
61 GGSNLGNLMS AGGSSLMTEM AGNVGGIITT NDGHLDRVAK FYKSSAALCD ATCT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [558-782] |
1 11 21 31 41 51
| | | | | |
1 WSGHLPPRSH RMLNYSPKVF LGGIPWDISE QSLIQIFKPF GSIKVEWPGK EQQAAQPKGY 60
61 VYIIFESDKQ VKALLSACVL QVDDSHCGRN YFFKISSRRI KSKDVEVIPW IIADSNFVRS 120
121 SSQKLDPTKT VFVGALHGKL TAEGLGNIMD DLFDGVLYAG IDTDKYKYPI GSGRVTFSNF 180
181 RSYMKAVSAA FIEIRTTKFT KKVQVDPYLE DALCSICGVQ HGPYY
|
| Detection Method: | |
| Confidence: | 52.154902 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.63987691433124 | bayes_pls_golite062009 |
| nucleic acid binding | 3.64594243387558 | bayes_pls_golite062009 |
| mRNA binding | 3.54495985180603 | bayes_pls_golite062009 |
| binding | 3.00411894202318 | bayes_pls_golite062009 |
| protein binding | 2.17260848225967 | bayes_pls_golite062009 |
| 1.71820051628117 | bayes_pls_golite062009 | |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.862661444935922 | bayes_pls_golite062009 |
| transcription regulator activity | 0.737458867828906 | bayes_pls_golite062009 |
| DNA binding | 0.691258294213766 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.599389001184667 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.366758605553422 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
| transcription activator activity | 0.119266921032347 | bayes_pls_golite062009 |
| structural molecule activity | 0.0829058000493267 | bayes_pls_golite062009 |
|
Region A: Residues: [783-913] |
1 11 21 31 41 51
| | | | | |
1 CRELSCFRYF CRSCWQWQHS CDIVKNHKPL TRNSKSQSLV GIGPSSSNVS LPFSGQRSIR 60
61 DNRMGNGQHQ QHQQHQYQQQ KHRQLQEYSQ PHSLNVMGNS GAANAAATSM VTLQQRQIHK 120
121 VRIQRQQHQA I
|
| Detection Method: | |
| Confidence: | 7.045757 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
