| Protein: | Eip93F-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1165 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Eip93F-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
936.0 | [0..8] | [1165..31] |
|
Region A: Residues: [1-159] |
1 11 21 31 41 51
| | | | | |
1 MHISSYEISL ERVAEECMGR RQWKHYQDKL TCSHLNIEEQ QPIAIAGSED EPSQYNHSSK 60
61 EISQSNPNHC KTENHRLEQQ HNGSQLLEEE DSENNQTSHD SSRTPTPGAT STPSPPPEPI 120
121 DWRPSAKCNF CVNGRLLTVN AQGKLVAESA ATATSSSTS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [160-398] |
1 11 21 31 41 51
| | | | | |
1 NSHIHQHDSD SNSSASLPHH ISSSSSSNNN SSGNRARHIA AASARATPAA ATPANSLELY 60
61 KLLTQRAAKM TSMDSMAAQL AQFSLLADFN LINSLASQQQ QQQQQQIASA VTPTTSEVSA 120
121 AAISPALKDT PSPSVDAPLD LSSKPSPNSS ISGDVKSVRA CATPTPSGRR AYSEEDLSRA 180
181 LQDVVANKLD ARKSASQHHE QRSILDNRLF KMKHHDQEQD HDGDELEDSN DDAEAEVDS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [399-573] |
1 11 21 31 41 51
| | | | | |
1 NASTPVYPAE FARAQLRKLS HLSEHNGSDL GEDVDRGSPK MGRHPACGNA SANQGAPPSI 60
61 PLDANVLLHT LMLAAGIGAM PKLDETQTVG DFIKGLLVAN SGGIMNEGLL NLLSASQENS 120
121 NGNASLLLQQ QQHQQHHQQH HQQQQQQQHV AAYRHRLPKS ETPETNSSLD PNDAS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [574-758] |
1 11 21 31 41 51
| | | | | |
1 EDPILKIPSF KVSGPASSSS LSPGGLVGGH HHPLNNNNSL SISNNSNHSS NSHRNGSNRS 60
61 PHSASPMLAA AVAQGGYSAG NSLLTSSSSS IQKMMASNIQ RQINEQSGQE SLRNGNVSDC 120
121 SSNNGGSSSL GYKKPSISVA KIIGGTDTSR FGASPNLLSQ QHHSAHHLTH QQQQQQLSAQ 180
181 EALGK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [759-889] |
1 11 21 31 41 51
| | | | | |
1 GTRPKRGKYR NYDRDSLVEA VKAVQRGEMS VHRAGSYYGV PHSTLEYKVK ERHLMRPRKR 60
61 EPKPQPDLVG LTGPANKLQL DKLKAGPHGG SKLSNALKNQ NNQAAAAAAA AAAAAAAATP 120
121 NGLKLPLFEA G
|
| Detection Method: | |
| Confidence: | 14.30103 |
| Match: | 2cobA |
| Description: | Solution structures of the HTH domain of human LCoR protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.5139760613123 | bayes_pls_golite062009 |
| transcription activator activity | 3.10621734076555 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.26183812259792 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| protein binding | 1.88087411289001 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.14886080629275 | bayes_pls_golite062009 |
| chromatin binding | 1.04132983826241 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.13444271681002 | bayes_pls_golite062009 |
|
Region A: Residues: [890-977] |
1 11 21 31 41 51
| | | | | |
1 PQALSFQPNM FWPQTNATNA YGLDFNRITE AMRNPQASNH HGLMKSAQDM VENVYDGIIR 60
61 KTLQASEGNG SAAGNGSNGS NGNGHGHG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [978-1052] |
1 11 21 31 41 51
| | | | | |
1 HGHGHALLDQ LLVKKTPLPF TNHRNNDYAA TCSSASGESV KRSGSPMGNY ADIKRERLSA 60
61 DSGGSSDEEH SASHI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1053-1165] |
1 11 21 31 41 51
| | | | | |
1 NNNNSDLAHN KNKSGGGGGG GGNGQTNGNG RSSRMTSRDD SETDASSLKS GESGGQQNHK 60
61 MMDLNGGSSS SSHIKCESEA ATGHHSPGHH TTSILHEKLA QIKAEQVDQA DQL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
