| Protein: | sqz-PA |
| Organism: | Drosophila melanogaster |
| Length: | 535 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sqz-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
713.0 | [0..3] | [535..363] |
|
Region A: Residues: [1-154] |
1 11 21 31 41 51
| | | | | |
1 MAELPTAPNG VPSGDYLHRS IDQLRSLGHL TTAQLVHDYK PFNISEFRQN VAERLDYSLK 60
61 NGLVQHQQQM VMEQQPHPDQ QQQQHLHHPQ QQQHPPQLKV SYSAPNSPPT PHEQQEQKYD 120
121 PNRSPPRQQM SSASGSGSNG SSPEEESRRG DGDQ
|
| Detection Method: |  |
| Confidence: | 61.221849 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [155-226] |
1 11 21 31 41 51
| | | | | |
1 AKPYKCGSCS KSFANSSYLS QHTRIHLGIK PYRCEICQRK FTQLSHLQQH IRTHTGDKPY 60
61 KCRHAGCPKA FS
|
| Detection Method: | |
| Confidence: | 4.78 |
| Match: | 1a1hA |
| Description: | ZIF268 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [227-319] |
1 11 21 31 41 51
| | | | | |
1 QLSNLQSHSR CHQTDKPFKC NSCYKCFSDE MTLLEHIPKH KDSKHLKTHI CNLCGKSYTQ 60
61 ETYLQKHLQK HAEKAEKQQH RHTAQVAAHQ QHV
|
| Detection Method: | |
| Confidence: | 21.69897 |
| Match: | 1tf6A |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| nucleic acid binding | 4.28215395396923 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.31369346002275 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| transcription repressor activity | 1.64349785387632 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| chromatin binding | 1.37132088004982 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.0497955246512 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.10558148421807 | bayes_pls_golite062009 |
|
Region A: Residues: [320-430] |
1 11 21 31 41 51
| | | | | |
1 PASGIGLNLQ RQAMNDVNAA YWAKMGADSA AASLAEAIQQ QLPQAGGQPY GNFASLQQQH 60
61 QQQQQELLHH QRLADTPGHS HSPHEEAAGE DLVLRQSTPQ HHLQQQQQQQ Q
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [431-535] |
1 11 21 31 41 51
| | | | | |
1 QQQAQQQQQA QHQPSPGPGN SAFTPLSATV APPPHLQQHR GPPGSAAAYL YQQNAAAAAA 60
61 AFPTQLISLH QIRNYAHQPG AAGLIAGDHL ALGLSAVNAA KEKAQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
