| Protein: | SF1-PA |
| Organism: | Drosophila melanogaster |
| Length: | 787 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SF1-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
392.0 | [0..208] | [713..1126] |
|
Region A: Residues: [1-236] |
1 11 21 31 41 51
| | | | | |
1 MSATPPDLLS LAASREVSAA VAVAASANGG SGRSADKERS RSRDRGRDKD KDRDKDRKKR 60
61 DKDSRDRDSR RRDDRGDRDR DRERDRDSRS HRSKSRNYDD GDRRRKRSRS RDRDRDRKRD 120
121 RDRDSRSRRS SSRGGRDDYD RSRRRRSRSR SYERRRNDRG SQRDQRDQHS QRSSRERTHV 180
181 NPFDTSNSRN SLNQDHDQSR IPSLFDRQQG LETIREEGRE QRFDLTQTIQ ELMGNA
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [237-338] |
1 11 21 31 41 51
| | | | | |
1 GGNKGFASFF NSQNSNDSTS NGAFDNSADS AAERKRKRKS RWGGSENDKT FIPGMPTILP 60
61 STLDPAQQEA YLVQFQIEEI SRKLRTGDLG ITQNPEERSP SP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [339-510] |
1 11 21 31 41 51
| | | | | |
1 EPIYSSDGKR LNTREFRYRK RLEEQRHQLI VKMQTVNPEF KPPADYKPPV TRVSDKVLIP 60
61 QEQHPDINFV GLLIGPRGNT LKAMEKDTGA KIIIRGKGSV KEGKVGRKDG QPLPGEDEPL 120
121 HAFITAPNPE AVRKAVDKIK DVIRQGIEVP EGHNDLRRMQ LRELAQLNGT LR
|
| Detection Method: | |
| Confidence: | 39.30103 |
| Match: | 1k1gA |
| Description: | RNA splicing factor 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 4.28581120742478 | bayes_pls_golite062009 |
| RNA binding | 4.07234389285213 | bayes_pls_golite062009 |
| binding | 3.45962790790935 | bayes_pls_golite062009 |
| mRNA binding | 2.74771386314615 | bayes_pls_golite062009 |
| protein binding | 2.21586499514642 | bayes_pls_golite062009 |
| transcription regulator activity | 2.01194399592256 | bayes_pls_golite062009 |
| DNA binding | 1.78469836520678 | bayes_pls_golite062009 |
| transcription factor activity | 0.866815968834173 | bayes_pls_golite062009 |
| 0.649281624091344 | bayes_pls_golite062009 | |
| structure-specific DNA binding | 0.64468203163713 | bayes_pls_golite062009 |
| transcription repressor activity | 0.594072241231183 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.28490151670131 | bayes_pls_golite062009 |
| transcription activator activity | 0.210494225017032 | bayes_pls_golite062009 |
| transcription factor binding | 0.139588254197875 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
|
Region A: Residues: [511-787] |
1 11 21 31 41 51
| | | | | |
1 ENDIQRCTCG STDHKSWQCP DKPIITNTIV CTSCGGTGHL TKDCRNKRPG SGVPGMACED 60
61 SQAKIDEEYM SLMAELGEGP PPPSASAKTD PPASNGPQLH RASYSIFDKK PSQMQAIQSP 120
121 PSSSSRDHQR DLGGWGAAAH EHGMGMEHGM GLDQHGHGLA AMDHGMSLGM EHAMAAYVPA 180
181 PPGTQAPPPM PPPLMPWMSA PQPPPPATEP LNPPIPGTLP PLIPPPPGTS APPMPPWGGG 240
241 AYSGWGGGYA PPPPPPCAPP PPALSLSQPP PPPPPSA
|
| Detection Method: | |
| Confidence: | 20.0 |
| Match: | 1y0fB |
| Description: | No description for 1y0fB was found. |
