| Protein: | Abd-B-PB |
| Organism: | Drosophila melanogaster |
| Length: | 493 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Abd-B-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
179.0 | [0..10] | [493..74] |
|
Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MQQHHLQQQQ QQQQQQEQQH LQEQQQHLQQ LHHHAHHHLP QPLHTTSHHH SAHPHLQQQQ 60
61 QQQQHAVVAS SPSSVLQQQQ QQSTPTTHST PTHAVMYEDP PPVPLVAVQQ QHLPAPQQQQ 120
121 QLQQQQQQQQ QQLATTPVAG AL
|
| Detection Method: |  |
| Confidence: | 4.522879 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [143-360] |
1 11 21 31 41 51
| | | | | |
1 SPAQTPTGPS AQQQQHLTSP HHQQLPQQQT PNSVASGASS NLQQQQQQQN AAVAPGQTQI 60
61 VAPTTASVSP SSVSSQKEDI NMSIQLAPLH IPAIRAGPGF ETDTSAAVKR HTAHWAYNDE 120
121 GFNQHYGSGY YDRKHMFAYP YPETQFPVGQ YWGPNYRPDQ TTSAAAAAAY MNEAERHVSA 180
181 AARQSVEGTS TSSYEPPTYS SPGGLRGYPS ENYSSSGA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [361-493] |
1 11 21 31 41 51
| | | | | |
1 SGGLSVGAVG PCTPNPGLHE WTGQVSVRKK RKPYSKFQTL ELEKEFLFNA YVSKQKRWEL 60
61 ARNLQLTERQ VKIWFQNRRM KNKKNSQRQA NQQNNNNNSS SNHNHAQATQ QHHSGHHLNL 120
121 SLNMGHHAAK MHQ
|
| Detection Method: | |
| Confidence: | 18.522879 |
| Match: | 1pufA |
| Description: | Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.3573497204506 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| DNA binding | 3.0205295442286 | bayes_pls_golite062009 |
| nucleic acid binding | 2.77547609431902 | bayes_pls_golite062009 |
| transcription factor activity | 2.57014522504183 | bayes_pls_golite062009 |
| transcription repressor activity | 2.08714353704046 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.01558895662904 | bayes_pls_golite062009 |
| transcription activator activity | 1.38536646126001 | bayes_pls_golite062009 |
| transcription factor binding | 1.1887755957055 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.06075239560835 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| chromatin binding | 0.807185147096719 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.57338514991304 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.336563012956291 | bayes_pls_golite062009 |
