| Protein: | pnr-PA |
| Organism: | Drosophila melanogaster |
| Length: | 540 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pnr-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
191.0 | [0..17] | [539..599] |
|
Region A: Residues: [1-165] |
1 11 21 31 41 51
| | | | | |
1 MGILLSDGDS TSDQQSTRDY PHFSGDYQNV TLSAASASTS ASASATHVAA VKMYHSSAVA 60
61 AYTDLAAAGS AASAGVGVGV SGYHQQAVNA PVYVPSNRQY NHVAAHFGSA AAQNAWTTEG 120
121 FGSAHAQFYS PNAAVMMGSW RSAYDPSGFQ RSSPYESAMD FQFGE
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [166-219] |
1 11 21 31 41 51
| | | | | |
1 GRECVNCGAI STPLWRRDGT GHYLCNACGL YHKMNGMNRP LIKPSKRLVS ATAT
|
| Detection Method: | |
| Confidence: | 2.68 |
| Match: | 2gatA |
| Description: | Erythroid transcription factor GATA-1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.84932768708444 | bayes_pls_golite062009 |
| DNA binding | 3.45124926204188 | bayes_pls_golite062009 |
| nucleic acid binding | 3.34875987514951 | bayes_pls_golite062009 |
| binding | 2.8684204787273 | bayes_pls_golite062009 |
| transcription activator activity | 2.7888666510808 | bayes_pls_golite062009 |
| transcription factor activity | 2.74592237402384 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.5486735958299 | bayes_pls_golite062009 |
| protein binding | 2.35367391992524 | bayes_pls_golite062009 |
| transcription repressor activity | 1.83119162033863 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.32499836066598 | bayes_pls_golite062009 |
| transcription factor binding | 1.22761682002 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.1269808729848 | bayes_pls_golite062009 |
| receptor activity | 0.910700236005457 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.449959641856445 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.446369866668139 | bayes_pls_golite062009 |
| catalytic activity | 0.133319360419662 | bayes_pls_golite062009 |
|
Region A: Residues: [220-282] |
1 11 21 31 41 51
| | | | | |
1 RRMGLCCTNC GTRTTTLWRR NNDGEPVCNA CGLYYKLHGV NRPLAMRKDG IQTRKRKPKK 60
61 TGS
|
| Detection Method: | |
| Confidence: | 10.39794 |
| Match: | 2gatA |
| Description: | Erythroid transcription factor GATA-1 |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.00967542385368 | bayes_pls_golite062009 |
| DNA binding | 3.60745514727532 | bayes_pls_golite062009 |
| nucleic acid binding | 3.47256374293954 | bayes_pls_golite062009 |
| binding | 2.96409924710655 | bayes_pls_golite062009 |
| transcription activator activity | 2.9532663930699 | bayes_pls_golite062009 |
| transcription factor activity | 2.90769972671972 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.72967350701574 | bayes_pls_golite062009 |
| protein binding | 2.44501340584871 | bayes_pls_golite062009 |
| transcription repressor activity | 1.88834375049208 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.50210964370113 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.49515149729803 | bayes_pls_golite062009 |
| transcription factor binding | 1.38523780690867 | bayes_pls_golite062009 |
| receptor activity | 1.05205471090697 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.68270103300828 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.58115018700114 | bayes_pls_golite062009 |
| catalytic activity | 0.101795606736461 | bayes_pls_golite062009 |
|
Region A: Residues: [283-429] |
1 11 21 31 41 51
| | | | | |
1 GSAVGAGTGS GTGSTLEAIK ECKEEHDLKP SLSLERHSLS KLHTDMKSGT SSSSTLMGHH 60
61 SAQQQQQQQQ QQQQQQQQQQ QQSAHQQCFP LYGQTTTQQQ HQQHGHSMTS SSGQAHLSAR 120
121 HLHGAAGTQL YTPGSSSGGG SASAYTS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [430-540] |
1 11 21 31 41 51
| | | | | |
1 HSAETPALSN GTPSPHYQHH HHLGGTHGHH VTAAAAHHHF HAAAAVAAYG VKTEASATNY 60
61 DYVNNCYFGG TFGALGGAAT TTAMAGGAAS ELAGYHHQHN VIQAAKLMAT S
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
