| Protein: | grn-PA |
| Organism: | Drosophila melanogaster |
| Length: | 486 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for grn-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
176.0 | [0..2] | [486..636] |
|
Region A: Residues: [1-253] |
1 11 21 31 41 51
| | | | | |
1 MDMTSTAEAA ARSWYDSPRL GGGGSSGGGN GGGVSPQTNG LGSAGSSLAH SHHSLSSGAS 60
61 SAGSSVGVGS ALGGGGGSGL DTSDMSAFYA LESNGHHRRY YPSYHQHTSR MPSTHASPQV 120
121 CRPHFHTPLS PWLTSEHKSF APASAWSMGQ FACPQEPQVE HKLGQMGQSH QTTAAGQHSF 180
181 PFPPTPPKDS TPDSVQTGPS EYQAVMNAFM HQQATGSTSL TDASCALDIK PSIQNGSASG 240
241 SSGSGTTHTS TPK
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [254-317] |
1 11 21 31 41 51
| | | | | |
1 QREEGRECVN CGATSTPLWR RDGTGHYLCN ACGLYYKMNG QNRPLIKPKR RLTLQSLQSA 60
61 AKRA
|
| Detection Method: | |
| Confidence: | 2.95 |
| Match: | 2gatA |
| Description: | Erythroid transcription factor GATA-1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.84932768708444 | bayes_pls_golite062009 |
| DNA binding | 3.45124926204188 | bayes_pls_golite062009 |
| nucleic acid binding | 3.34875987514951 | bayes_pls_golite062009 |
| binding | 2.8684204787273 | bayes_pls_golite062009 |
| transcription factor activity | 2.74592237402384 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.23212813739998 | bayes_pls_golite062009 |
| transcription activator activity | 1.45965791386122 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.44741411126911 | bayes_pls_golite062009 |
| protein binding | 1.30321965120678 | bayes_pls_golite062009 |
| transcription factor binding | 1.22761682002 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.1269808729848 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.02819346233483 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.551724917261005 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.449959641856445 | bayes_pls_golite062009 |
| transcription repressor activity | 0.199267983374872 | bayes_pls_golite062009 |
| catalytic activity | 0.133319360419662 | bayes_pls_golite062009 |
|
Region A: Residues: [318-393] |
1 11 21 31 41 51
| | | | | |
1 GTSCANCKTT TTTLWRRNAS GEPVCNACGL YYKLHNVNRP LTMKKEGIQT RNRKLSSKSK 60
61 KKKGLGGGCL PIGGHL
|
| Detection Method: | |
| Confidence: | 10.69897 |
| Match: | 2gatA |
| Description: | Erythroid transcription factor GATA-1 |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.00967542385368 | bayes_pls_golite062009 |
| DNA binding | 3.60745514727532 | bayes_pls_golite062009 |
| nucleic acid binding | 3.47256374293954 | bayes_pls_golite062009 |
| binding | 2.96409924710655 | bayes_pls_golite062009 |
| transcription factor activity | 2.90769972671972 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.40923942043513 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.62841402245495 | bayes_pls_golite062009 |
| transcription activator activity | 1.62405765585032 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.49515149729803 | bayes_pls_golite062009 |
| protein binding | 1.39455913713025 | bayes_pls_golite062009 |
| transcription factor binding | 1.38523780690867 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.26452462867497 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.68943696300126 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.58115018700114 | bayes_pls_golite062009 |
| transcription repressor activity | 0.256420113528322 | bayes_pls_golite062009 |
| catalytic activity | 0.101795606736461 | bayes_pls_golite062009 |
|
Region A: Residues: [394-486] |
1 11 21 31 41 51
| | | | | |
1 GMGDFKPLDP SKGFGGGFSA SMAQHGHLSS GLHPAHAHMH GSWYTGGMGA LGASSGLQGG 60
61 FSTAGSLSGA VVPHSQPYHL GLSSMGTWRT DYT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
