| Protein: | Scr-PA, Scr-PB |
| Organism: | Drosophila melanogaster |
| Length: | 417 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Scr-PA, Scr-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
127.0 | [0..1] | [417..1] |
|
Region A: Residues: [1-132] |
1 11 21 31 41 51
| | | | | |
1 MDPDCFAMSS YQFVNSLASC YPQQMNPQQN HPGAGNSSAG GSGGGAGGSG GVVPSGGTNG 60
61 GQGSAGAATP GANDYFPAAA AYTPNLYPNT PQAHYANQAA YGGQGNPDMV DYTQLQPQRL 120
121 LLQQQQQQQQ QQ
|
| Detection Method: |  |
| Confidence: | 3.69897 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [133-322] |
1 11 21 31 41 51
| | | | | |
1 HAHAAAAVAA QQQQQLAQQQ HPQQQQQQQQ ANISCKYAND PVTPGGSGGG GVSGSNNNNN 60
61 SANSNNNNSQ SLASPQDLST RDISPKLSPS SVVESVARSL NKGVLGGSLA AAAAAAGLNN 120
121 NHSGSGVSGG PGNVNVPMHS PGGGDSDSES DSGNEAGSSQ NSGNGKKNPP QIYPWMKRVH 180
181 LGTSTVNANG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [323-417] |
1 11 21 31 41 51
| | | | | |
1 ETKRQRTSYT RYQTLELEKE FHFNRYLTRR RRIEIAHALC LTERQIKIWF QNRRMKWKKE 60
61 HKMASMNIVP YHMGPYGHPY HQFDIHPSQF AHLSA
|
| Detection Method: | |
| Confidence: | 22.154902 |
| Match: | 1homA |
| Description: | DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF THE ANTENNAPEDIA HOMEODOMAIN FROM DROSOPHILA IN SOLUTION BY 1H NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
