| Protein: | Rpn5-PA |
| Organism: | Drosophila melanogaster |
| Length: | 502 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Rpn5-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
350.0 | [0..1] | [502..1] |
|
Region A: Residues: [1-215] |
1 11 21 31 41 51
| | | | | |
1 MDTYLFDGGR ITKMEVDYEP ACNEKIPLAK ELAKKNPDAF HEAIEMMLQL EKQTRLGADM 60
61 VSCSRVLVAI CQICFDASNW NALNEYVSLL VRRRSQLKQA VVKMIQECVT YVDKTPDKET 120
121 KLKLIDTLRS VTEGKIYVEI ERARLTKILA DIKEADGDVA GAATVMEELQ VETYGSMDKR 180
181 EKVELILEQM RLCLLKEDYV STQIIAKKIS IKFFD
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [216-381] |
1 11 21 31 41 51
| | | | | |
1 DPAQHDLKLK FYYLMIQLNR DTSFLNTSRH YQAIAEPPRK KTGLTPVDSA ASTDEQKKKD 60
61 DDKKKKEEDD KDKKPEVATE AEVEIELTEE QKKELTEKLV CAVLYCVLAP FDNEQSDMMA 120
121 HLSKNKKLEE VPAYKEILRL FMSKELINFD TFNADFGLVL AENEMF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [382-502] |
1 11 21 31 41 51
| | | | | |
1 KDSTKHGKKC ITELKDRLIE HNIRIIAMYY SRLHLARMSE LLNLPTSRCE EYLSKLANTD 60
61 TIRVKIDRPA GIIYFTQKKS ASDILNNWAT DVNQLMSLVN KTCHLINKEE CVYSVMCAVE 120
121 D
|
| Detection Method: | |
| Confidence: | 11.045757 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.69037212939381 | bayes_pls_golite062009 |
| nucleic acid binding | 2.51073261475907 | bayes_pls_golite062009 |
| transcription regulator activity | 2.46972120642276 | bayes_pls_golite062009 |
| DNA binding | 2.34739506178536 | bayes_pls_golite062009 |
| hydrolase activity | 2.30467124306022 | bayes_pls_golite062009 |
| transcription factor activity | 1.63630978976366 | bayes_pls_golite062009 |
| protein binding | 0.653872239015235 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.42089068572633 | bayes_pls_golite062009 |
| transcription activator activity | 0.177144423226603 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.136726704233672 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.118016217031359 | bayes_pls_golite062009 |
| transcription repressor activity | 0.0832641811501794 | bayes_pls_golite062009 |
