| Protein: | cas-PA |
| Organism: | Drosophila melanogaster |
| Length: | 793 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cas-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
600.0 | [0..142] | [707..368] |
|
Region A: Residues: [1-235] |
1 11 21 31 41 51
| | | | | |
1 MSNQMEFIMQ LYMMNLMKQQ QQMQLQLPQQ QQQQQLAGYT YTQNEDISSS TSVQQQQQQQ 60
61 QEQLQQPQPD LRKTRTHKRI SSQNTNCSSS RSCSPNSNLI AFQPQQYPGA TAATPSTPNS 120
121 HPSNLVNQML LQSLPPLTQL MLQQQQQQHL LTTSNLLLTP THTPSSLGKQ DPLQHPLLLG 180
181 QFAGSEQMAT NNFLQSSTVT STPIEREKAA TPAPSAGATA GNLSAAQVKF EQESA
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [236-284] |
1 11 21 31 41 51
| | | | | |
1 DDDEDDDKPL SSLTSCSSSG HTNASSEKLL LSGVHPLEST TDSLDSPSM
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [285-389] |
1 11 21 31 41 51
| | | | | |
1 YTPVKQPADS SYGLITPVDS DLTPNTPLQP TQTISLLTPP SSEQSKSLVS LSAASGLDAL 60
61 LQNEEVLKNL RKVSSYLECE NSLCRQENLR EHFHCHEEPC QGKIL
|
| Detection Method: | |
| Confidence: | 18.522879 |
| Match: | 1meyC |
| Description: | Designed zinc finger protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [390-491] |
1 11 21 31 41 51
| | | | | |
1 SKKDDIIRHL KWHKKRKESL KLGFARFSSS DDCAPAYGEG CAYNWKQTHY HCVYEHCPKV 60
61 YVSTSDVQMH ANFHRKDSEI VNEGFRRFRA HETCRIEDCP FF
|
| Detection Method: | |
| Confidence: | 26.69897 |
| Match: | 1tf6A |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| transcription repressor activity | 3.27542149084008 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.34049786451995 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [492-707] |
1 11 21 31 41 51
| | | | | |
1 GKKISHYHCC REGCTHTFKN KADMDKHKTY HLKDHQLKMD GFKKILKTEV CPFDACKFST 60
61 VCNHIHCVRE GCDYILHSSS QMISHKRKHD RQDGEQAYQQ FKIKQDVEES SLDAMPQQQQ 120
121 QQQQQQPTSL SQSQSSSSVC GGSNTSTPLS SLSAEHFLAR KRGRPPKKIQ LPADAQQSEA 180
181 KRLKVEDESS NPAMLLPQSQ PAAAVHPLTS GLFPGL
|
| Detection Method: | |
| Confidence: | 50.522879 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [708-793] |
1 11 21 31 41 51
| | | | | |
1 LPAAAAPGVD PTAPNFQLTH LMALFQLQNP LFYQNLYPGM TQNSSMLGNL AALSAASAAA 60
61 AAAAAANGAG VQQPKAEFSF KPEFKE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
