| Protein: | opa-PA |
| Organism: | Drosophila melanogaster |
| Length: | 609 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for opa-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
757.0 | [0..1] | [609..343] |
|
Region A: Residues: [1-92] |
1 11 21 31 41 51
| | | | | |
1 MMMNAFIEPA QHHLASYGLR MSPNTTASNS NAQQQQQQQL EMTQQQQQQQ QQQQQQQQQD 60
61 QESAAATAAA YQNSGYGHFN SYASRDFLLG RR
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [93-172] |
1 11 21 31 41 51
| | | | | |
1 EAEYGVAGSA GQASAAADSM LFSGFPAQAA ELGSGFGQHP FHSHHHHHQM RMGMADAYAA 60
61 GHPYNHHGNF PTAAVHHPVV
|
| Detection Method: | |
| Confidence: | 17.39794 |
| Match: | 1g2fC |
| Description: | TATA box-binding zinc finger, TATAZF |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [173-394] |
1 11 21 31 41 51
| | | | | |
1 HHPSHHAMSA MHPAGAGAFL RYMRHQPASS ASSVKQEMQC LWIDPDQPGL VPPGGRKTCN 60
61 KVFHSMHEIV THLTVEHVGG PECTTHACFW VGCSRNGRPF KAKYKLVNHI RVHTGEKPFA 120
121 CPHPGCGKVF ARSENLKIHK RTHTGEKPFK CEHEGCDRRF ANSSDRKKHS HVHTSDKPYN 180
181 CRINGCDKSY THPSSLRKHM KVHGNVDEKS PSHGYDSEGE ES
|
| Detection Method: | |
| Confidence: | 26.30103 |
| Match: | 2gliA |
| Description: | Five-finger GLI1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
| transcription repressor activity | 1.64349785387632 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.10558148421807 | bayes_pls_golite062009 |
|
Region A: Residues: [395-609] |
1 11 21 31 41 51
| | | | | |
1 SSSSIITGGA QTPPSTRLDG SAGSSSGVSS LSGGSGIKSS PHSIKSEPNP MHSVHLGASS 60
61 SGSSSTASSS ASHLLQHQQH QHQQQQQQQQ HQQQAQQQQQ LTAHPSDPKS SPALQLMAAS 120
121 ASAYLPPPLG PPPSHHHHPH HHQAAPSPGA AAASASMLHH NHHLLYHPAA QHHPPSDWYH 180
181 TTAPSGSAEA MNPLNHFGHH HHHHHLMHPG AATAY
|
| Detection Method: | |
| Confidence: | 58.30103 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
