| Protein: | pain-PA |
| Organism: | Drosophila melanogaster |
| Length: | 913 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pain-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
516.0 | [0..4] | [593..25] |
|
Region A: Residues: [1-455] |
1 11 21 31 41 51
| | | | | |
1 MDFNNCGFID PQAQLAGALA KQDIRQFVAA LDSGALADLQ DDRHTSIYEK ALSTPGCRDF 60
61 IEACIDHGSQ VNYINKKLDK AAISYAADSR DPGNLAALLK YRPGNKVQVD RKYGQLTPLN 120
121 SLAKNLTDEN APDVYSCMQL LLDYGASPNI VDQGEFTPLH HVLRKSKVKA GKKELIQLFL 180
181 DHPELDIDSY RNGEVRRLLQ AQFPELKLPE ERHTGPEIDI QTLQRTLRDG DETLFEQQFA 240
241 EYLQNLKGGA DNQLNAHQEE YFGLLQESIK RGRQRAFDVI LSTGMDINSR PGRANEANLV 300
301 ETAVIYGNWQ ALERLLKEPN LRLTPDSKLL NAVIGRLDEP PYDGSSHQRC FELLINSDRV 360
361 DINEADSGRL VPLFFAVKYR NTSAMQKLLK NGAYIGSKSA FGTLPIKDMP PEVLEEHFDS 420
421 CITTNGERPG DQNFEIIIDY KNLMRQERDS GLNQL
|
| Detection Method: |  |
| Confidence: | 91.69897 |
| Match: | 1n11A |
| Description: | Ankyrin-R |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| metal ion transmembrane transporter activity | 3.06689459321273 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 2.89029061890648 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 2.66479899929908 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 2.59441577402651 | bayes_pls_golite062009 |
| calcium channel activity | 2.42383730626707 | bayes_pls_golite062009 |
| mechanically-gated ion channel activity | 2.39992943698319 | bayes_pls_golite062009 |
| mechanically gated channel activity | 2.39992943698319 | bayes_pls_golite062009 |
| channel activity | 2.39688396372487 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 2.39688396372487 | bayes_pls_golite062009 |
| cation channel activity | 2.37772481426745 | bayes_pls_golite062009 |
| ion channel activity | 2.36752848265558 | bayes_pls_golite062009 |
| substrate-specific channel activity | 2.26531840012081 | bayes_pls_golite062009 |
| gated channel activity | 1.75472864911207 | bayes_pls_golite062009 |
| protein binding | 1.62940095931841 | bayes_pls_golite062009 |
| binding | 1.48463036580652 | bayes_pls_golite062009 |
| transporter activity | 1.19000052859754 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.02570255606772 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.835937200249181 | bayes_pls_golite062009 |
| receptor activity | 0.415279977682022 | bayes_pls_golite062009 |
| signal transducer activity | 0.143078152901993 | bayes_pls_golite062009 |
| molecular transducer activity | 0.143078152901993 | bayes_pls_golite062009 |
| transmembrane receptor activity | 0.124764997485166 | bayes_pls_golite062009 |
|
Region A: Residues: [456-753] |
1 11 21 31 41 51
| | | | | |
1 QDEMAPIAFI AESKEMRHLL QHPLISSFLF LKWHRLSVIF YLNFLIYSLF TASIITYTLL 60
61 KFHESDQRAL TAFFGLLSWL GISYLILREC IQWIMSPVRY FWSITNIMEV ALITLSIFTC 120
121 MESSFDKETQ RVLAVFTILL VSMEFCLLVG SLPVLSISTH MLMLREVSNS FLKSFTLYSI 180
181 FVLTFSLCFY ILFGKSVEED QSKSATPCPP LGKKEGKDEE QGFNTFTKPI EAVIKTIVML 240
241 TGEFDAGSIQ FTSIYTYLIF LLFVIFMTIV LFNLLNGLAV SDTQVIKAQA ELNGAICR
|
| Detection Method: | |
| Confidence: | 17.30103 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [754-913] |
1 11 21 31 41 51
| | | | | |
1 TNVLSRYEQV LTGHGRAGFL LGNHLFRSIC QRLMNIYPNY LSLRQISVLP NDGNKVLIPM 60
61 SDPFEMRTLK KASFQQLPLS AAVPQKKLLD PPLRLLPCCC SLLTGKCSQM SGRVVKRALE 120
121 VIDQKNAAEQ RRKQEQINDS RLKLIEYKLE QLIQLVQDRK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
