| Protein: | Dll-PA |
| Organism: | Drosophila melanogaster |
| Length: | 327 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dll-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
135.0 | [0..21] | [211..25] |
|
Region A: Residues: [1-104] |
1 11 21 31 41 51
| | | | | |
1 MDAPDAPHTP KYMDGGNTAA SVTPGINIPG KSAFVELQQH AAAGYGGIRS TYQHFGPQGG 60
61 QDSGFPSPRS ALGYPFPPMH QNSYSGYHLG SYAPPCASPP KDDF
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [105-194] |
1 11 21 31 41 51
| | | | | |
1 SISDKCEDSG LRVNGKGKKM RKPRTIYSSL QLQQLNRRFQ RTQYLALPER AELAASLGLT 60
61 QTQVKIWFQN RRSKYKKMMK AAQGPGTNSG
|
| Detection Method: | |
| Confidence: | 18.30103 |
| Match: | 1b8iA |
| Description: | Ultrabithorax (ubx) homeodomain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 2.82910876106939 | bayes_pls_golite062009 |
| DNA binding | 2.71139715874068 | bayes_pls_golite062009 |
| binding | 2.59102816487173 | bayes_pls_golite062009 |
| nucleic acid binding | 2.4041998404334 | bayes_pls_golite062009 |
| transcription factor activity | 2.30605638403993 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.81835017168096 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.77114246571754 | bayes_pls_golite062009 |
| protein binding | 0.853351196918381 | bayes_pls_golite062009 |
| transcription activator activity | 0.81440394306575 | bayes_pls_golite062009 |
| transcription repressor activity | 0.77814500281111 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.57338514991304 | bayes_pls_golite062009 |
| transcription factor binding | 0.22865859991459 | bayes_pls_golite062009 |
| chromatin binding | 0.203837749053719 | bayes_pls_golite062009 |
|
Region A: Residues: [195-327] |
1 11 21 31 41 51
| | | | | |
1 MPLGGGGPNP GQHSPNQMHS GGNNGGGSNS GSPSHYLPPG HSPTPSSTPV SELSPEFPPT 60
61 GLSPPTQAPW DQKPHWIDHK PPPQMTPQPP HPAATLHPQT HHHNPPPQMG GYVPQYWYQP 120
121 ETNPSLVTVW PAV
|
| Detection Method: | |
| Confidence: | 1.09 |
| Match: | 2j63A |
| Description: | No description for 2j63A was found. |
