| Protein: | retn-PB |
| Organism: | Drosophila melanogaster |
| Length: | 911 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for retn-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
235.0 | [0..1] | [911..1] |
|
Region A: Residues: [1-278] |
1 11 21 31 41 51
| | | | | |
1 MQLRVHPTMD CSGRSTSNIE RDSDLGDDLS HGDRTDDEMR DCDSVDGEHH QLSAKAAIAA 60
61 RLSHTVSGGG GSFASPEPQT ELPLSHHHQL PPNHPLNALG SFMGIGGLHS IPNLQHSDVL 120
121 EKLKMQVRDM KVGLMEQDYA AAAHAAAFGA NMLPTTISSG FPLPHNSVAF GHVTSSPSGG 180
181 NGSSYNGGTT PTNSSNSNAT TNGGGTAGPG GTGGSGGGGG GGGGGGGGVG GHQFSFASPT 240
241 AAPSGKEARH FAANSASNSS TSSEASNSSQ QNNGWSFE
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [279-397] |
1 11 21 31 41 51
| | | | | |
1 EQFKQVRQLY EINDDPKRKE FLDDLFSFMQ KRGTPINRLP IMAKSVLDLY ELYNLVIARG 60
61 GLVDVINKKL WQEIIKGLHL PSSITSAAFT LRTQYMKYLY PYECEKKNLS TPAELQAAI
|
| Detection Method: | |
| Confidence: | 16.30103 |
| Match: | 1ryuA |
| Description: | Solution Structure of the SWI1 ARID |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.55411292098115 | bayes_pls_golite062009 |
| DNA binding | 4.42692928312159 | bayes_pls_golite062009 |
| nucleic acid binding | 4.31553768044343 | bayes_pls_golite062009 |
| transcription activator activity | 3.52298398128865 | bayes_pls_golite062009 |
| binding | 2.97217702905299 | bayes_pls_golite062009 |
| transcription repressor activity | 2.80681923216447 | bayes_pls_golite062009 |
| transcription factor activity | 2.58593134374376 | bayes_pls_golite062009 |
| protein binding | 1.76687312643483 | bayes_pls_golite062009 |
| transcription factor binding | 1.28734696305262 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.13378621684772 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.06026105710513 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.04454363470311 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.46237393414621 | bayes_pls_golite062009 |
|
Region A: Residues: [398-519] |
1 11 21 31 41 51
| | | | | |
1 DGNRREGRRS SYGQYEAMHN QMPMTPISRP SLPGGMQQMS PLALVTHAAV ANNQQAQAAA 60
61 AAAAAHHRLM GAPAFGQMPN LVKQEIESRM MEYLQLIQAK KEQGMPPVLG GNHPHQQQHS 120
121 QQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [520-740] |
1 11 21 31 41 51
| | | | | |
1 QQQQQHHHQQ QQQQQSQQQH HLQQQRQRSQ SPDLSKHEAL SAQVALWHMY HNNNSPPGSA 60
61 HTSPQQREAL NLSDSPPNLT NIKREREREP TPEPVDQDDK FVDQPPPAKR VGSGLLPPGF 120
121 PANFYLNPHN MAAVAAAAGF HHPSMGHQQD AASEGEPEDD YAHGEHNTTG NSSSMHDDSE 180
181 PQQMNGHHHH QTHHLDKSDD SAIENSPTTS TTTGGSVGHR H
|
| Detection Method: | |
| Confidence: | 6.0 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [741-911] |
1 11 21 31 41 51
| | | | | |
1 SSPVSTKKKG GAKPQSGGKD VPTEDKDASS SGKLNPLETL SLLSGMQFQV ARNGTGDNGE 60
61 PQLIVNLELN GVKYSGVLVA NVPLSQSETR TSSPCHAEAP TVEEEKDEEE EEEPKAAEEE 120
121 SHRSPVKQEN EDVDQDMEGS EVLLNGGASA VGGAGAGVGV GVPLLKDAVV S
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
