| Protein: | pita-PA |
| Organism: | Drosophila melanogaster |
| Length: | 683 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pita-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
829.0 | [0..18] | [681..588] |
|
Region A: Residues: [1-144] |
1 11 21 31 41 51
| | | | | |
1 MAAKLEVREA MLTEKRVCRF CLTEQKLASI FEENPRVKTT ANLPLQIMAI TAIEVYAGDG 60
61 MPGHICLECR LLFEHCYRFK QMCKRAETLL RQYPLTGNWP SPLEKPRAPM TMVASKKLLV 120
121 VPAKTAEPSE TPKKLLNTMA KSSS
|
| Detection Method: |  |
| Confidence: | 2.96 |
| Match: | 1pzwA |
| Description: | Crystal structure of the zinc finger associated domain of the Drosophila transcription factor Grauzone |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.84932768708444 | bayes_pls_golite062009 |
| DNA binding | 3.45124926204188 | bayes_pls_golite062009 |
| nucleic acid binding | 3.34875987514951 | bayes_pls_golite062009 |
| binding | 2.8684204787273 | bayes_pls_golite062009 |
| transcription factor activity | 2.74592237402384 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.23212813739998 | bayes_pls_golite062009 |
| transcription repressor activity | 1.83119162033863 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.66264161250652 | bayes_pls_golite062009 |
| transcription activator activity | 1.45965791386122 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.44741411126911 | bayes_pls_golite062009 |
| protein binding | 1.30321965120678 | bayes_pls_golite062009 |
| transcription factor binding | 1.22761682002 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.1269808729848 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.0478696280786 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.02819346233483 | bayes_pls_golite062009 |
| structural molecule activity | 0.958501322313092 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.449959641856445 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.396758023480682 | bayes_pls_golite062009 |
| catalytic activity | 0.133319360419662 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.118746589104525 | bayes_pls_golite062009 |
|
Region A: Residues: [145-268] |
1 11 21 31 41 51
| | | | | |
1 QVIIEDVQVL ESAMVTPRTV AGSSPVPRRS HAYELKVDNN QELSMDDVQS MLEDMASELE 60
61 KEFPDIPQKA SPVKPKVLNK SSIRILNKGP AAPVEPRLAT PKVKRDDSGN VAIVTEVLDS 120
121 DLPL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [269-437] |
1 11 21 31 41 51
| | | | | |
1 DDQDDPTKNA EKVATDVFPC PDCERSFPLQ QLLEIHRLNH TRSRSFQCLL CEKSFFSKYD 60
61 LAKHNFVHTG ERPFKCAICS KAFTRKALLH RHERTHTDVP KFICVYCEKP FLSRQEMEKH 120
121 AERHQKKRPF QCGVCTKSFA FKQGLERHET VHSTNLPFPC QHCERSFST
|
| Detection Method: | |
| Confidence: | 62.09691 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [438-593] |
1 11 21 31 41 51
| | | | | |
1 ASKLARHLVA HAGKRAYPCK YCHKSYMLSH HLSRHLRTHT QTSDASFVCS ECKVSYSNYN 60
61 DLLDHALIHA TASLKCPMCR KQIEDIDSVE SHMDQHKQSE RHACEFCDHI FLTQKCLQRH 120
121 IEDDHVVEME PYQNEFEDDG EGEGGVDEKE EHLDDF
|
| Detection Method: | |
| Confidence: | 19.39794 |
| Match: | 1tf6A |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| transcription repressor activity | 3.27542149084008 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.48624530884061 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.34049786451995 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.18599503594288 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.311339098303136 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [594-683] |
1 11 21 31 41 51
| | | | | |
1 EDMDNVKQEE FVTEYLEDDA LYEDHLDDSD ESFTPPPPKQ RKTNPPKDAQ QSVRQTRSRD 60
61 AQRITQKTGK NEGKPHHKLE RNLKNRRSAK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
