| Protein: | dve-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1024 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dve-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
1022.0 | [0..1] | [1024..1] |
|
Region A: Residues: [1-249] |
1 11 21 31 41 51
| | | | | |
1 MDFQSAMETF AEAWVAANAG QQSQALALTR AVNAAAVVAS ANAKSPNASS SASASLADLA 60
61 VKKEHSISPP HSVVSVGVGV AGEDQHRRSS LQGVQEKLTQ LQMQQQHHQQ QQQQQQQQQQ 120
121 QHQQQQQHHH HQQQAQQAGA GVGSGELAGR RSSEGTPPTA HPPTNSEGQA LSSSTASSSQ 180
181 NATPKSDRER ERERERDREE RVERGSISCL PPAALGMAVG VQQAQHQEKL LSHPALDSRR 240
241 EFDVSKVNP
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [250-440] |
1 11 21 31 41 51
| | | | | |
1 KSLPLHCVVE SVHSLHASLT IDTRQPWKRR PNIETDSYVI IAAATPWSEI VQTALQRLGY 60
61 SQEVANTARG SLIIKHWKPI PLEQISDNPA VPVSDIVGEL TSVITLRIVI LRPKTSPFGE 120
121 IKDKLLKLLV LQSHAVLRST GCPLDEVTLS QICRSSHQNT YALPGGEISD ELRRKFDQWW 180
181 SNQLSPQATA M
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [441-538] |
1 11 21 31 41 51
| | | | | |
1 TPKMLPFMTG PSAVPVPVAV PGEMDFPVGT AMAAAAAAAA HAAAAGGAAG GNPLGSMGSR 60
61 ESLLLANEAA HHAGAGQAPG PGHHGSMLVH PMHASMHH
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [539-873] |
1 11 21 31 41 51
| | | | | |
1 HHHHGGGGGH GPPYPNQKTR MRTSFDPEME LPKLQKWFAD NPHPSRQQIQ TYVVQLNALE 60
61 SRRGRKPLDV NNVVYWFKNA RAAQKRAEMR GGSLGSAISA LGHAAMNGYL SQHAPLGQNS 120
121 SSSAGSQPMS MGNLSMSHDY LKSPLSLKSE DIDTMSQHSD DMDEEQSRPN TPQLPLSLTT 180
181 HERHRSSPLM DEDEDEAGEQ QQPQEAKSDG MNGSVKDEER QEKSRDELQD NEKENSNGED 240
241 RHLDADAQME ASSNLNNNHN NSSLHIEQEV GSTPKRSTPK EEDDDLDMDE DEEDNENDAS 300
301 HLDEFRSPSP DLAGGVVPHK DQLPFPMVPN SMFSQ
|
| Detection Method: | |
| Confidence: | 4.045757 |
| Match: | 1epwA |
| Description: | Botulinum neurotoxin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.40096962515027 | bayes_pls_golite062009 |
| transcription regulator activity | 2.15398264148864 | bayes_pls_golite062009 |
| nucleic acid binding | 1.95513305822187 | bayes_pls_golite062009 |
| DNA binding | 1.80079581406991 | bayes_pls_golite062009 |
| transcription factor activity | 1.15427978494805 | bayes_pls_golite062009 |
| protein binding | 0.757492117682468 | bayes_pls_golite062009 |
|
Region A: Residues: [874-1024] |
1 11 21 31 41 51
| | | | | |
1 SFMYMSHYIP AFGQAAAGHP HHHAAAAAAA AGIQPNALMG GGGLNLSSIS NEERRKRNRT 60
61 FIDPVTEVPK LEQWFAMNTH PSHNLILKYT EDLNTMPYRQ KFPRLESKNV QFWFKNRRAK 120
121 CKRLKMSLYD SNQCAQLGGL GSFVPKYEER D
|
| Detection Method: | |
| Confidence: | 4.27 |
| Match: | 1o4xA |
| Description: | TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.86538715425734 | bayes_pls_golite062009 |
| DNA binding | 4.40186699787632 | bayes_pls_golite062009 |
| nucleic acid binding | 4.28652307290136 | bayes_pls_golite062009 |
| transcription factor activity | 3.78935192723648 | bayes_pls_golite062009 |
| binding | 2.92574888336072 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.15328641013602 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.00875399167309 | bayes_pls_golite062009 |
| transcription repressor activity | 1.69615348178304 | bayes_pls_golite062009 |
| transcription activator activity | 1.5973137667873 | bayes_pls_golite062009 |
| transcription factor binding | 1.24678737091956 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.865913662624162 | bayes_pls_golite062009 |
| chromatin binding | 0.82130998265632 | bayes_pls_golite062009 |
| protein binding | 0.795494287543952 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.691780246385357 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.0723215858239072 | bayes_pls_golite062009 |
