| Protein: | comr-PA |
| Organism: | Drosophila melanogaster |
| Length: | 600 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for comr-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
1133.0 | [0..1] | [600..1] |
|
Region A: Residues: [1-102] |
1 11 21 31 41 51
| | | | | |
1 MSGNQDTLGQ SQQVNESGDE YEEDAATSWT NELEQQESRT PADSPEFLDF VDSEDPLEDF 60
61 ERNPLQKEPL DLAVKPVSDI NKKAAENHRR IYRQLGIHIP ET
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [103-232] |
1 11 21 31 41 51
| | | | | |
1 PKSHPLLHYA FVVKLFLATD NSSIHYLKWS ANGRELEVDY QGMQEHLSSG CSMFHCRNTL 60
61 QFTGTLLAHG FERVSLKDVR KSSATNITLI YRNPNFVKGQ LLKLHKLAQE CEKIPEISSP 120
121 GTAEPRRPPL
|
| Detection Method: | |
| Confidence: | 5.43 |
| Match: | 1hksA |
| Description: | SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF DROSOPHILA HEAT SHOCK TRANSCRIPTION FACTOR |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.23858959608048 | bayes_pls_golite062009 |
| DNA binding | 4.78517210147551 | bayes_pls_golite062009 |
| nucleic acid binding | 4.72059012764202 | bayes_pls_golite062009 |
| transcription factor activity | 4.02736190679869 | bayes_pls_golite062009 |
| transcription activator activity | 3.46623224639317 | bayes_pls_golite062009 |
| binding | 3.37660003833383 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.31558616762587 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.41045867230388 | bayes_pls_golite062009 |
| transcription repressor activity | 1.9708626903609 | bayes_pls_golite062009 |
| protein binding | 1.77689943618029 | bayes_pls_golite062009 |
| transcription factor binding | 0.752335897765285 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.490809930581315 | bayes_pls_golite062009 |
| structural molecule activity | 0.128347187436068 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.0406721670764369 | bayes_pls_golite062009 |
|
Region A: Residues: [233-404] |
1 11 21 31 41 51
| | | | | |
1 HLPNYAHISR MVRRGDLCST PYTSRSALQV ARCHFQTLLG YQADLGVLKD RNNHDMFNKN 60
61 IMTQLNVKRG RSSINNAPVD LAPSKVSFEK FVKPHESVIN IGIGQAPDYA GYYGQVELFK 120
121 VNEFFSEYLP RYGSKITGYK EIVMDATNKS IGFQQNLPIG MNYSDDEDDA LP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [405-600] |
1 11 21 31 41 51
| | | | | |
1 PISSDLDLDF MPSTSAAAKM KSTGRKVVED SDLEQAMQEL CGGSNLNEEE ELPQTSTRFK 60
61 AKPKPRAKTK AKPTKRQAKP VHSSSSECED FKPDEVYEGF KSRNPKNVKL KPSDENISYT 120
121 LEEGTDFEEQ VIEETTETKV QDSQYDDLDD DDDDEEEDYF DEDDEDYVYK NLQYRNPPEP 180
181 PKSRRYDLRN SKRNPR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
