| Protein: | bl-PB |
| Organism: | Drosophila melanogaster |
| Length: | 413 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bl-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
301.0 | [0..46] | [387..1455] |
|
Region A: Residues: [1-84] |
1 11 21 31 41 51
| | | | | |
1 MLKYFEERDE DFDVRLLIHQ SLAGCVIGKG GQKIKEIRDR IGCRFLKVFS NVAPQSTDRV 60
61 VQTVGKQSQV IEAVREVITL TRDT
|
| Detection Method: |  |
| Confidence: | 9.522879 |
| Match: | 2axyA |
| Description: | Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.76415077523249 | bayes_pls_golite062009 |
| mRNA binding | 5.07455187994216 | bayes_pls_golite062009 |
| nucleic acid binding | 4.78650555542715 | bayes_pls_golite062009 |
| binding | 3.45962790790935 | bayes_pls_golite062009 |
| 2.87067043110488 | bayes_pls_golite062009 | |
| transcription regulator activity | 2.28364833275102 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 2.05765562493656 | bayes_pls_golite062009 |
| DNA binding | 2.03207983673692 | bayes_pls_golite062009 |
| transcription factor activity | 1.30278154718684 | bayes_pls_golite062009 |
| protein binding | 1.16541072642796 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.981003625136521 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.489176583045793 | bayes_pls_golite062009 |
| transcription repressor activity | 0.392035003865213 | bayes_pls_golite062009 |
| transcription activator activity | 0.324382863054631 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.32222928997178 | bayes_pls_golite062009 |
| transcription factor binding | 0.254024117548226 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.1069917291606 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0321875054165348 | bayes_pls_golite062009 |
|
Region A: Residues: [85-322] |
1 11 21 31 41 51
| | | | | |
1 PIKGAIHNYD PMNFDRVYAD EYGGYGTGSG STRPSQRGNN RNGGGAGGVA GGAAGGNGGG 60
61 FNAGGARGNA GGRGGADRFG GAAGGAVAGA GMGQRDNPFI NPWANGGGGD VDGFGNNAGG 120
121 AGGFAGNSFG GGAGGPFGGG SFGNNGFGGG PSDFGGNSGN FGQAQGTNSL PSLGSFSQNQ 180
181 GGTSSLPSLG SFGQNPGGPG GLGNGLSGGA NGGVGTLGGA NGAGGFNAVG GANGGPNG
|
| Detection Method: | |
| Confidence: | 3.06 |
| Match: | 1wckA |
| Description: | Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [323-413] |
1 11 21 31 41 51
| | | | | |
1 SPNAATNVPQ GHDPNNSTQV TIPKELAGAI IGKGGGRIRR IRNESSAYIT IDEPLPNSND 60
61 RIITISGTPK QIQMAQYLLQ QSVHENGRRN I
|
| Detection Method: | |
| Confidence: | 17.0 |
| Match: | 1zziA |
| Description: | Crystal Structure Analysis of the third KH domain of hnRNP K in complex with ssDNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.76415077523249 | bayes_pls_golite062009 |
| mRNA binding | 5.07455187994216 | bayes_pls_golite062009 |
| nucleic acid binding | 4.78650555542715 | bayes_pls_golite062009 |
| binding | 3.45962790790935 | bayes_pls_golite062009 |
| 2.87067043110488 | bayes_pls_golite062009 | |
| transcription regulator activity | 2.28364833275102 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 2.05765562493656 | bayes_pls_golite062009 |
| DNA binding | 2.03207983673692 | bayes_pls_golite062009 |
| transcription factor activity | 1.30278154718684 | bayes_pls_golite062009 |
| protein binding | 1.16541072642796 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.981003625136521 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.489176583045793 | bayes_pls_golite062009 |
| transcription repressor activity | 0.392035003865213 | bayes_pls_golite062009 |
| transcription activator activity | 0.324382863054631 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.32222928997178 | bayes_pls_golite062009 |
| transcription factor binding | 0.254024117548226 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.1069917291606 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0321875054165348 | bayes_pls_golite062009 |
