| Protein: | Dp-PB |
| Organism: | Drosophila melanogaster |
| Length: | 441 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dp-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
515.0 | [0..1] | [431..1] |
|
Region A: Residues: [1-145] |
1 11 21 31 41 51
| | | | | |
1 MCISETKEPP HLPISNSAGQ ISKMLKPAQN KSEMEGGKPV AVVYATGSSA RNSGSASGIG 60
61 NVGRMGAFSQ MGSQGQFIRL QDNGLSIPKT EAGTTYTTVS AQKTSGAGSG HYDLPLKGDR 120
121 YVKFTPNPIK MKSKLHAIQS NSLHS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [146-241] |
1 11 21 31 41 51
| | | | | |
1 MSASSSSVQR KRKPDKAGKG LRHFSMKVCE KVEEKGKTTY NEVADDLVSE EMKNNAYDNN 60
61 CDQKNIRRRV YDALNVLMAI NVISKDKKEI RWIGLP
|
| Detection Method: | |
| Confidence: | 32.0 |
| Match: | 1cf7B |
| Description: | Cell cycle transcription factor DP-2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.55329976718261 | bayes_pls_golite062009 |
| DNA binding | 5.08959163553491 | bayes_pls_golite062009 |
| nucleic acid binding | 4.99681957904233 | bayes_pls_golite062009 |
| transcription factor activity | 4.33152142980289 | bayes_pls_golite062009 |
| transcription activator activity | 3.66421521631643 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.54603684370312 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.60738445921725 | bayes_pls_golite062009 |
| transcription repressor activity | 2.22485867684613 | bayes_pls_golite062009 |
| protein binding | 1.80415286835431 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.2723726467408 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.913018999939773 | bayes_pls_golite062009 |
| transcription factor binding | 0.85714789329232 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.697234220778482 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.66743181561551 | bayes_pls_golite062009 |
| DNA helicase activity | 0.300899564141452 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.23177057841536 | bayes_pls_golite062009 |
| structural molecule activity | 0.111941063082739 | bayes_pls_golite062009 |
|
Region A: Residues: [242-441] |
1 11 21 31 41 51
| | | | | |
1 ANSTETFLAL EEENCQRRER IKQKNEMLRE MIMQHVAFKG LVERNKRNES QGVVPSPNAS 60
61 IQLPFIIVNT HKSTKINCSV TNDKSEYIFK FDKTFEMHDD IEVLKRMGFL LGLDKGECTP 120
121 ENIERVKSWV PPNLAKYVEA YGTGKTGENM YESDDEDNEF NGYLESANES QGFAQHSAQH 180
181 TTDGEFKLEM DDDELDDDID
|
| Detection Method: | |
| Confidence: | 54.0 |
| Match: | 2azeA |
| Description: | Structure of the Rb C-terminal domain bound to an E2F1-DP1 heterodimer |
Matching Structure (courtesy of the PDB): |
|
