| Protein: | Sin3A-PD |
| Organism: | Drosophila melanogaster |
| Length: | 1751 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Sin3A-PD.
| Description | E-value | Query Range |
Subject Range |
|
|
1319.0 | [0..1] | [1750..1] |
|
Region A: Residues: [1-914] |
1 11 21 31 41 51
| | | | | |
1 MMKRTRVDEV QFGTRPVPQT SGGVGVGVVG VTGGGPTSGG GGTATVGVNT TGVTIGTVVP 60
61 SAHNATISGI GSIHHRILTP QHGGAQTIAY LPSTTPTATN LKTTTSIVDS TTAGGPVGAG 120
121 AQVAVGVGSA AGGGGVVVST GSTGTQTLQY TTSYSVASIQ AGGTLKANTA DGANTVQIHV 180
181 TGGGAANNPA SAQTVSSSSQ TGTIRQRTIS GTQTVATAVG NLATISQQQP VQQSPLGKAQ 240
241 TPPSSVVANS IPVGGTTPPQ GQSGNATPRL KVEDALSYLD QVKYQYADQP QIYNNFLDIM 300
301 KEFKSHCIDT PGVIERVSTL FKGHTELIYG FNMFLPPGYK IEIHSDALGC SVPVVSMPSP 360
361 PGAPTSTGTV HMLTGNSSMS GAGHIAIKTT NAATLTPAAG AGAAAAAAAV AQIQSAGAVN 420
421 LMTHGGASLT QTTIHALQQA TPPQSQSPGG GHVHVSVTNS TAANAVVPGQ PGISVSAHNV 480
481 PQNYSRDRER ATITPTGQVA GAAANVNASA SIVVGGPPTP NSLSELSPHG GAGGGPGAGA 540
541 AQHNLHHIQQ AHQSILLGET GQQNQPVEFN HAITYVNKIK NRFQNQPAKY KKFLEILHDY 600
601 QREQKVMKEG SLNQGKMLTE QEVYTQVAKL FGQDEDLLRE FGQFLPDATN HQSGQYMSKS 660
661 ASVHNDHGKR PTATLSGGAH ITMSSASPAP SGSPLHLGAT TLPQIDKSAH AAAIGNLSAV 720
721 NTSVSIKTYN NNQQQQNHVI GSGLNATRND ILFEKDYHAG LQQQAHQRGA GVGGHHHLAG 780
781 TAAGANIGRP GVGASVMVSY DKEHRNNHHV QKYVGHAPNQ NLTHGHNAKK SPSYGIPSVI 840
841 GSMPHISDNS LDRSSPGISY ATPPLPSGPH GQHNSGSATR RPGDDSLVGH YASGAPPAKR 900
901 PKPYCRDVSF SEAS
|
| Detection Method: |  |
| Confidence: | 93.522879 |
| Match: | 1y0fB |
| Description: | No description for 1y0fB was found. |
|
Region A: Residues: [915-1008] |
1 11 21 31 41 51
| | | | | |
1 SKCTISDAAF FDKVRKALRS PEVYDNFLRC LTLFNQEIVS KTELLGLVSP FLMKFPDLLR 60
61 WFTDFLGPPS GQPAGGLIDG MPLAATQRQG GGSS
|
| Detection Method: | |
| Confidence: | 1.86 |
| Match: | 2f05A |
| Description: | No description for 2f05A was found. |
| Term | Confidence | Notes |
| protein deacetylase activity | 4.85550095681437 | bayes_pls_golite062009 |
| histone deacetylase activity | 4.80822599235131 | bayes_pls_golite062009 |
| transcription repressor activity | 4.25514230798992 | bayes_pls_golite062009 |
| transcription regulator activity | 3.82193713323077 | bayes_pls_golite062009 |
| deacetylase activity | 3.68673303770777 | bayes_pls_golite062009 |
| transcription corepressor activity | 3.30769773581294 | bayes_pls_golite062009 |
| nucleic acid binding | 2.83214064778422 | bayes_pls_golite062009 |
| DNA binding | 2.82083682611814 | bayes_pls_golite062009 |
| transcription factor binding | 2.73494763175272 | bayes_pls_golite062009 |
| transcription cofactor activity | 2.59356984380124 | bayes_pls_golite062009 |
| binding | 2.59005615358803 | bayes_pls_golite062009 |
| transcription factor activity | 1.99794029160509 | bayes_pls_golite062009 |
| protein binding | 1.36724461365736 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.918453145717461 | bayes_pls_golite062009 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 0.864804910849344 | bayes_pls_golite062009 |
| transcription activator activity | 0.570282420961288 | bayes_pls_golite062009 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 0.536470369536903 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.512364998565023 | bayes_pls_golite062009 |
| catalytic activity | 0.30211814650972 | bayes_pls_golite062009 |
|
Region A: Residues: [1009-1142] |
1 11 21 31 41 51
| | | | | |
1 NSSHDRGTSH QSAAEYVQDV DLSSCKRLGA SYCALPQSTV PKKCSGRTAL CREVLNDKWV 60
61 SFPTWASEDS TFVTSRKTQF EETIYRTEDE RFELDLVIEV NSATIRVLEN LQKKMSRMST 120
121 EELSKFHLDD HLGG
|
| Detection Method: | |
| Confidence: | 64.376751 |
| Match: | PF08295.3 |
| Description: | No description for PF08295.3 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1143-1262] |
1 11 21 31 41 51
| | | | | |
1 TSQTIHQRAI HRIYGDKSGE IITGMKKNPF VAVPIVLKRL KVKEEEWREA QKTFNKQWRE 60
61 QNEKYYLKSL DHQAINFKPN DMKALRSKSL FNEIETLYDE RHDQEDDAME PFGPHLVLPY 120
121
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1263-1551] |
1 11 21 31 41 51
| | | | | |
1 KDKTILDDAA NLLIHHVKRQ TGIQKQEKQK IKQIIRQFVP DLFFAPRQPL SDDERDDAFP 60
61 FLVDDNTKMD VDSPLGRTES STRNAKSTPS ESASPARSNA STSSVTPAGI KKETDDSKAT 120
121 TGSFAPASSA TASSATPVDD ATPSTSSAAA AASAASSSTV SGTEGKPKDD PLSSHKEEGA 180
181 GSTSSGVATS PRQAQDTAGA GVDVEIKLEH PADFSNPKLL PPHAHGQRED ESYTLFFANN 240
241 NWYLFLRLHA ILCDRLHVMY ERARLLAIEE ERCRVNRRES TATALRLKP
|
| Detection Method: | |
| Confidence: | 1.41 |
| Match: | 1h1kI |
| Description: | THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1552-1673] |
1 11 21 31 41 51
| | | | | |
1 KPEIQVEDYY PTFLDMLKNV LDGNMDSNTF EDTMREMFGI YAYISFTLDK VVSNAVRQLQ 60
61 YCVTERAALD CVELFATEQR RGCTGGFCRD AHKTFDREMS YQRKAESILN EENCFKVYIY 120
121 KI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1674-1751] |
1 11 21 31 41 51
| | | | | |
1 DCRVTIELLD SEPEEVDKPA ALKAQKFSKY VERLANPALG GGGNTGRSDS ALGNDSVVDG 60
61 SDIKTEADED TAEVNTKA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
