| Protein: | psq-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1046 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for psq-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
637.0 | [0..605] | [1043..605] |
|
Region A: Residues: [1-137] |
1 11 21 31 41 51
| | | | | |
1 MAAVRGHQYF SLRWNNYQNT MTSVFQQLRE DLSFVDVTLS CEHGSLKAHK VVLSACSTYF 60
61 QKLLLENPCK HPTIILPADI IFTDLKTIID FVYRGEIDVT ESELQGLLRT AEQLKIKGLC 120
121 ETAENADDLN DAATATI
|
| Detection Method: |  |
| Confidence: | 10.39794 |
| Match: | 2ihcA |
| Description: | No description for 2ihcA was found. |
|
Region A: Residues: [138-204] |
1 11 21 31 41 51
| | | | | |
1 TVSENIQQAV VGNIVNAAIV PGAPSPSLEQ QQQHHQQQQQ QQAQEQHQQQ QVHAQQQQQQ 60
61 QQQINAA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [205-310] |
1 11 21 31 41 51
| | | | | |
1 LLTQHGVSSG SVSLSGQLLS SSASGSSGSL AGGQQASQTP SGLQPTPRKS RLKRSKSPDL 60
61 SSGGGAGSSG GSSSGSTQQQ PQPAHHHHPQ TILIQGQNPN SIVSLQ
|
| Detection Method: | |
| Confidence: | 11.39794 |
| Match: | 2dlqA |
| Description: | No description for 2dlqA was found. |
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription activator activity | 3.52873291636993 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| transcription repressor activity | 3.27542149084008 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.53101891154822 | bayes_pls_golite062009 |
| chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
| protein binding | 2.05530362750351 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.34049786451995 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [311-440] |
1 11 21 31 41 51
| | | | | |
1 QTADGNYIPV SGSGDDSDAE DHEHEHNHGH GHGHGGHTHG HGHSHEHSHD HEHEHKPNKI 60
61 CKTEHSVASP ASNSSSASNN AAGVSGVTST GQAIVTQIVV ARDGKDTKNM TSLGMGMNGG 120
121 LLGVPMGFLD
|
| Detection Method: | |
| Confidence: | 42.0 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [441-609] |
1 11 21 31 41 51
| | | | | |
1 FTPEPPAPSA TPVTVTEHVD LSCNPSTDTR DLSNTTEPLD IDNHLAQQIH RLDQSPMHSI 60
61 SHHHTGDESN SNLVQHIKSE VIEAKHLAAQ HHALSQAQQQ HAHHQAHQQH QQHQQQQHQQ 120
121 QQQHLHAQQL LAQSQLQQQQ QQQQQQQQHH QQQQQQAAAA AAAAGVHGQ
|
| Detection Method: | |
| Confidence: | 14.221849 |
| Match: | 1tf6A |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription activator activity | 3.52873291636993 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| transcription repressor activity | 3.27542149084008 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.53101891154822 | bayes_pls_golite062009 |
| chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
| protein binding | 2.05530362750351 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.34049786451995 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [610-670] |
1 11 21 31 41 51
| | | | | |
1 HGGHVTHADI GGATVMEIDP SQIKHEPGMI ITPEIVNMMS SGHMDMYNSD TSEDSMMIAN 60
61 G
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [671-917] |
1 11 21 31 41 51
| | | | | |
1 SPHDQKEPHY TNLDQQHGLG GSVCGPGPGG AGGGGGMSGG AGSGSGEKDA LKNQNMSLTK 60
61 ASAIYGIPST TLWQRAHRMG IETPKKEGGT KSWNEDALQN ALEALRSGQI SANKASKAFG 120
121 IPSSTLYKIA RREGIRLAAP FNAAPTTWTP EDLERALEAI RAGNTSVQKA SAEFGIPTGT 180
181 LYGRCKREGI ELSRSNPTPW SEDAMNEALN SVRVGQMSIN QAAIHYNLPY SSLYGRFKRG 240
241 KYDVVAN
|
| Detection Method: | |
| Confidence: | 1.08 |
| Match: | 2q1zA |
| Description: | No description for 2q1zA was found. |
|
Region A: Residues: [918-1046] |
1 11 21 31 41 51
| | | | | |
1 TSGVALLNTS GNTTGSIEII EHSQENSLHM LQQQFPYSPS PHPPTPQHHS TPQHHSSAQQ 60
61 GPPTPQHMQQ HVVHMQQQQQ QQQQQSPHPG HHPQHMQQDV VTSSSQVVHS QQQQQLQQIY 120
121 QHHGTPERS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
