| Protein: | Caf1-105-PA |
| Organism: | Drosophila melanogaster |
| Length: | 747 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Caf1-105-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
502.0 | [0..8] | [561..901] |
|
Region A: Residues: [1-429] |
1 11 21 31 41 51
| | | | | |
1 MKCKIPEISW HNRDPVLSVD IQQNGLGLRS PTICRLASGG SDAHVLIWYV NRSDDAEGVD 60
61 VELAADLSRH QRAVNAVRWS PNGELLASGD DESVVFIWKQ KADHEVVNIV DADGCSEQDK 120
121 EVWLTLKVLR GHREDIYDLS WAPNSQFLVS GSVDNTAMLW DVHSGKSLAI LDDHKGYVQG 180
181 VAWDPCNQYI ATMSTDRQMR IFDANTKRVL HRVSKCVLPV KEDHEMHGKS MRLYQDGTLQ 240
241 TFFRRLCFTP DGKLLLTPSG ITDYDGVVKP INTSYGFSRH DLSKPAFVLP FPKEYAVAVR 300
301 CSPVLYRLRP YNAEKNPPII SLPYRMIYAV ATKNAVFFYD TQQPVPFAIV SNIHYSRLTD 360
361 LAWSSDGTVL IVSSTDGYCS LITFEPTELG DCYEDMETVL SVVLKSSENA TVLKKKRQKL 420
421 RKVSLDEPR
|
| Detection Method: |  |
| Confidence: | 72.39794 |
| Match: | 1vyhC |
| Description: | PAF-AH Holoenzyme: Lis1/Alfa2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 2.79445416141967 | bayes_pls_golite062009 |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| transcription regulator activity | 2.3610959773142 | bayes_pls_golite062009 |
| nucleic acid binding | 2.30918780727915 | bayes_pls_golite062009 |
| transcription repressor activity | 2.29049708962212 | bayes_pls_golite062009 |
| dynein binding | 1.74989209255308 | bayes_pls_golite062009 |
| DNA binding | 1.71685536470455 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.41752877005447 | bayes_pls_golite062009 |
| protein binding | 1.21879977456466 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.19593750149343 | bayes_pls_golite062009 |
| transcription factor activity | 1.08768505897883 | bayes_pls_golite062009 |
| 0.88172763425403 | bayes_pls_golite062009 | |
| histone binding | 0.685319917508843 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.625780732991652 | bayes_pls_golite062009 |
| actin binding | 0.529861581509437 | bayes_pls_golite062009 |
| transcription factor binding | 0.489473003915035 | bayes_pls_golite062009 |
| snoRNA binding | 0.347797037104681 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.30761651528651 | bayes_pls_golite062009 |
| DNA helicase activity | 0.220747580531792 | bayes_pls_golite062009 |
| structural molecule activity | 0.0936365746095786 | bayes_pls_golite062009 |
|
Region A: Residues: [430-523] |
1 11 21 31 41 51
| | | | | |
1 KPLQEKSKPN TIRRASEAGI TEVGEPELDA ENDSSTHSVS SNKTNSPKTK ASEEEKPTPI 60
61 AIRRSPRKNS TAPMPIAIRR APRKPEDKGN SESS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [524-747] |
1 11 21 31 41 51
| | | | | |
1 KPKDEMEVTH TKTTQVQKTV ASPVKRKVST EAVPPAETSQ PALAVIPVFE KEIISSDDKF 60
61 ESPEKKSRPA TPIQVRRQPR TPGSSSQFNL TPKSQPAKQA TPIAVRRTPR VLIEMPVNSP 120
121 VVPMEEAMDA WPLDESITPL PATKKDSRKP LPETVKTETK PAVIEASEAT CERTEDIRLV 180
181 YEDTQEETPK NPTESGPSTP NNKTPRRVSL RTISTPKSKK KLLE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
