| Protein: | sns-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1479 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sns-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
801.0 | [0..36] | [1479..38] |
|
Region A: Residues: [1-206] |
1 11 21 31 41 51
| | | | | |
1 MALQQQHQRH QQHQQHQQQQ QQQQQQQHIK WQQHATKRRR CRQHWIKHLQ LLRLLAVIVL 60
61 ASAPVPSHAQ QQKFRTTPHD LQVLEGAEAM MRCEVANVAG AVQWTKDGFA LGFSAVIPGF 120
121 PRYSVLGDRK QGIYNLRISN ASINDDADYQ CQVGPARLNS AIRANAKLTV ISPPASIEIK 180
181 GYSHNSKVEV RENQDLQLKC IVANAK
|
| Detection Method: |  |
| Confidence: | 25.69897 |
| Match: | 2c1oA |
| Description: | ENAIIHis Fab fragment in the free form |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [207-846] |
1 11 21 31 41 51
| | | | | |
1 PAAQIVWYRG NVEYKPEKRE DTVEESTAKR FTTTSSLKLK PGPDDDYTEY TCQARHKALS 60
61 PDMPMRATVQ LSVLYPPGPP YIEGYSAGET LRRGQTVELM CRSRGGNPPA QLIWYKNGSQ 120
121 IRMAYRTSGR LSENIYTFTA EAGDNKARFR CEASNVMSQN PLKAEVELSV LFAPTHVTVM 180
181 GPTEARVGDI VPLTCTTAPS NPPAEIKWMV GGRQVRNATS KTIVSPEGGW TTTSNITAVV 240
241 EPNKRSLVVI CHGLNMQLTE NVVSTHTINV LYPPAPPLIS GYMEGQIIPA GSVQKLLCVS 300
301 SGGNPLATLT WYKNDKRINS VIRAADKSVS AEITILANVS DNQAQYRCEA SNSATEIPLF 360
361 QSTTLSVHFA PETVKIRIEP EELRPGMEAT IICDSSSSNP PAKLSWWKDG IPIEGINNTS 420
421 KPGLWGGTVS TLEFRVNVTQ EMNGQVYTCQ SANEALQRSA HEAVSLDVLY RPKFVPPPSS 480
481 TAVGVEGESL QVSLQTRANP TPVTYKWTKD GTTIPQDGDH RIFADGGSLN FTRLHRDDAG 540
541 IYSCSASNSQ GGATLNITVV VEYGTTIKSV SENIVVNPGE DAMLSCTVEG KPLTEEHVKW 600
601 ERVGYDMTVK TSTTFANGTS YLHIKDAKRE DVGNFRCVAD
|
| Detection Method: | |
| Confidence: | 64.0 |
| Match: | 1e07A |
| Description: | Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [847-1061] |
1 11 21 31 41 51
| | | | | |
1 NRVDNPTNRD ILLIVKFAPE IAKTPTLLRA ASGTGERGRL PCRAQGSPKP QFIWRQDKKD 60
61 LPINRTYKYE VEERKIDSLT YESTLIVDKV APADYGAYEC VARNELGEAV ETVRLEITSQ 120
121 PDPPLSLNIL NVTHDTVTLA WTPGFDGGLK ASYRVRYRMA DREQYKYIDG LPNSHKLTIG 180
181 GLRMNTLYLF SVMSWNELGQ SSYLPDLARA ETKGL
|
| Detection Method: | |
| Confidence: | 35.69897 |
| Match: | 2nziA |
| Description: | No description for 2nziA was found. |
|
Region A: Residues: [1062-1178] |
1 11 21 31 41 51
| | | | | |
1 ELMPAELTED SSNTPNLVII GISLAAFGFL LVNASLVAWF FVHQRRKKVA ETTNQPAKTA 60
61 TIEMYAPSSY NDTVTGETLS SVSEKSESYS NEGSSQPEYI DEVRKKAAST YLVEGSD
|
| Detection Method: | |
| Confidence: | 17.154902 |
| Match: | 1qg3A |
| Description: | Integin beta-4 subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1179-1346] |
1 11 21 31 41 51
| | | | | |
1 MPPPRYQKDG TLPVIYPNNV VNACTLPHPR HNNGSAAIHM TRDDQMLISK GVYIPSPSPA 60
61 PPPDGSYYNM NSDRYLSYPP MEYPAALDFT AQPMPMAHLQ PMTVTSLATN GGPTLIGNGS 120
121 VAAVAGGSGT LRRGILRGVV GVPQPDVTHH TSTVGGSPMQ MLHDLHPV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1347-1479] |
1 11 21 31 41 51
| | | | | |
1 NLSASTLTTS TTLNGSLPTA TATLPRQPHG ILKDPNRNKQ QQQQQQQQQQ QQQLQHQQQL 60
61 LNASLVGVGV PVSAPLGSLQ ILNLPPASGG LGNNLLMTTN AFDPTTVGLS SFGAVSQAGG 120
121 IPVAYTDADG HLV
|
| Detection Method: | |
| Confidence: | 10.522879 |
| Match: | 2cqvA |
| Description: | Solution structure of the eighth Ig-like domain of human myosin light chain kinase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| antigen binding | 6.15874156332332 | bayes_pls_golite062009 |
| receptor activity | 3.17924100507291 | bayes_pls_golite062009 |
| signal transducer activity | 3.10913345555941 | bayes_pls_golite062009 |
| molecular transducer activity | 3.10913345555941 | bayes_pls_golite062009 |
| transmembrane receptor activity | 2.91032591770004 | bayes_pls_golite062009 |
| binding | 2.74708244886154 | bayes_pls_golite062009 |
| protein binding | 2.22855404705168 | bayes_pls_golite062009 |
| olfactory receptor activity | 2.08021142115894 | bayes_pls_golite062009 |
| receptor binding | 1.70260377709721 | bayes_pls_golite062009 |
| peptide antigen binding | 1.66960790017756 | bayes_pls_golite062009 |
| cell adhesion molecule binding | 1.36789541796983 | bayes_pls_golite062009 |
| IgG binding | 1.27089907020716 | bayes_pls_golite062009 |
| protein complex binding | 1.19581190330569 | bayes_pls_golite062009 |
| integrin binding | 0.599569390248921 | bayes_pls_golite062009 |
| monosaccharide binding | 0.533047672054027 | bayes_pls_golite062009 |
| immunoglobulin binding | 0.48272957113121 | bayes_pls_golite062009 |
| fibroblast growth factor 1 binding | 0.323725749644669 | bayes_pls_golite062009 |
| MHC class II receptor activity | 0.251167772391909 | bayes_pls_golite062009 |
| platelet-derived growth factor receptor binding | 0.1619066412638 | bayes_pls_golite062009 |
| extracellular matrix structural constituent | 0.0606967061070782 | bayes_pls_golite062009 |
| G-protein coupled receptor activity | 0.01716416477363 | bayes_pls_golite062009 |
