| Protein: | dpn-PA |
| Organism: | Drosophila melanogaster |
| Length: | 435 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dpn-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
243.0 | [0..1] | [435..1] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MDYKNDINSD DDFDCSNGYS DSYGSNGRMS NPNGLSKAEL RKTNKPIMEK RRRARINHCL 60
61 NELKSLILEA MKKDPARHTK LEKADILEMT VKHLQSVQRQ QLN
|
| Detection Method: |  |
| Confidence: | 13.0 |
| Match: | 1an4A |
| Description: | Usf B/HLH domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.38658950816179 | bayes_pls_golite062009 |
| DNA binding | 5.18654839258297 | bayes_pls_golite062009 |
| nucleic acid binding | 5.05768805749761 | bayes_pls_golite062009 |
| transcription factor activity | 4.78039531631248 | bayes_pls_golite062009 |
| binding | 3.81829206350975 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.39500382187264 | bayes_pls_golite062009 |
| transcription factor binding | 2.61163564741984 | bayes_pls_golite062009 |
| transcription repressor activity | 2.58751248599889 | bayes_pls_golite062009 |
| transcription activator activity | 2.5495467409976 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 2.42306484786159 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.31910036997977 | bayes_pls_golite062009 |
| transcription corepressor activity | 2.03674713048499 | bayes_pls_golite062009 |
| protein binding | 1.59929864805879 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.52770895937238 | bayes_pls_golite062009 |
| promoter binding | 0.8576109846276 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.3513586903977 | bayes_pls_golite062009 |
|
Region A: Residues: [104-203] |
1 11 21 31 41 51
| | | | | |
1 MAIQSDPSVV QKFKTGFVEC AEEVNRYVSQ MDGIDTGVRQ RLSAHLNQCA NSLEQIGSMS 60
61 NFSNGYRGGL FPATAVTAAP TPLFPSLPQD LNNNSRTESS
|
| Detection Method: | |
| Confidence: | 4.522879 |
| Match: | 2db7A |
| Description: | No description for 2db7A was found. |
| Term | Confidence | Notes |
| transcription regulator activity | 4.32360164200263 | bayes_pls_golite062009 |
| DNA binding | 4.02051725052534 | bayes_pls_golite062009 |
| nucleic acid binding | 3.93314497121404 | bayes_pls_golite062009 |
| transcription factor activity | 3.47415635303836 | bayes_pls_golite062009 |
| binding | 3.22662593014843 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.49509042716951 | bayes_pls_golite062009 |
| transcription repressor activity | 2.02281452178123 | bayes_pls_golite062009 |
| protein binding | 1.46569798429756 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.531186377572287 | bayes_pls_golite062009 |
| transcription factor binding | 0.507261685411423 | bayes_pls_golite062009 |
|
Region A: Residues: [204-252] |
1 11 21 31 41 51
| | | | | |
1 APAIQMGGLQ LIPSRLPSGE FALIMPNTGS AAPPPGPFAW PGSAAGVAA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [253-435] |
1 11 21 31 41 51
| | | | | |
1 GTASAALASI ANPTHLNDYT QSFRMSAFSK PVNTSVPANL PENLIHTLPG QTQLPVKNST 60
61 SPPLSPISSI SSHCEESRAA SPTVDVMSKH SFAGVFSTPP PTSAETSFNT SGSLNLSAGS 120
121 HDSSGCSRPL AHLQQQQVSS TSGIAKRDRE AEAESSDCSL DEPSSKKFLA GAIEKSSSAW 180
181 RPW
|
| Detection Method: | |
| Confidence: | 1.09 |
| Match: | 2j63A |
| Description: | No description for 2j63A was found. |
