YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0310297, CG1...
Organism:	Drosophila melanogaster
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0310297, CG1....

Description	E-value	Query Range	Subject Range
gi\|186468985, gi... - gi\|23124578\|ref\|ZP_00106558.1\| COG4886: Leucine-rich repeat (LRR) protein [Nostoc punctiforme PCC 73...	139.0	[0..7]	[175..25]
gi\|75907715, gi\|... - gi\|75907715\|ref\|YP_322011.1\| small GTP-binding protein domain-containing protein [Anabaena variabili...	138.0	[0..1]	[181..240]
gi\|76658493 - gi\|76658493\|ref\|XP_587414.2\| PREDICTED: similar to leucine rich repeat and death domain containing p...	136.0	[0..1]	[182..128]
gi\|113477255, gi... - gi\|71673924\|ref\|ZP_00671672.1\| Small GTP-binding protein domain [Trichodesmium erythraeum IMS101], g...	134.0	[0..1]	[182..140]
FBpp0300846 - type=protein; loc=3R:join(22363345..22363506,22370765..22370882,22380079..22380661,22380955..2238137...	133.0	[0..1]	[176..59]
gi\|73982558 - gi\|73982558\|ref\|XP_540770.2\| PREDICTED: similar to leucine rich repeat and death domain containing p...	133.0	[0..1]	[180..124]
gi\|50920483, gi\|... - gi\|50920483\|ref\|XP_470602.1\| Putative receptor-like protein kinase [Oryza sativa (japonica cultivar-...	133.0	[0..1]	[170..128]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKPTTLKDA LAKWEDRNKQ PAATATEIGL QFQYPPIEKM DPILNSLTEC QKLSLSSNMI  60
   61 EKITGISGMK NLKVLSLARN NLKTLNGIEP LADTLEELWV SYNNIEKTKP LESMKALRVF 120
  121 YISFNMIKDW TEFMRMGVPP NLSEITFVGN PLNENMDQSA FTAEAVRRLP NMKKLDGEPV 180
  181 IR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.0
Match:	1ds9A
Description:	Outer arm dynein light chain 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	0.855005887426675	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.385952210584	bayes_pls_golite062009
pyrophosphatase activity	0.3320262623287	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.317770809462228	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.316320686860908	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: