| Protein: | EMX2_MOUSE |
| Organism: | Mus musculus |
| Length: | 253 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EMX2_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
|
156.0 | [0..1] | [253..1] |
|
|
155.0 | [0..1] | [253..1] |
|
|
155.0 | [0..1] | [253..1] |
|
|
150.0 | [0..1] | [253..111] |
|
|
143.0 | [0..1] | [253..1] |
|
|
142.0 | [0..1] | [253..1] |
|
|
142.0 | [0..1] | [253..1] |
|
|
142.0 | [0..8] | [242..2] |
|
Region A: Residues: [1-136] |
1 11 21 31 41 51
| | | | | |
1 MFQPAPKRCF TIESLVAKDS PLPASRSEDP IRPAALSYAN SSPINPFLNG FHSAAAAAAA 60
61 GRGVYSNPDL VFAEAVSHPP NPAVPVHPVP PPHALAAHPL PSLHSPHPLF ASQQRDPSTF 120
121 YPWLIHRYRY LGHRFQ
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [137-253] |
1 11 21 31 41 51
| | | | | |
1 GNDTSPESFL LHNALARKPK RIRTAFSPSQ LLRLEHAFEK NHYVVGAERK QLAHSLSLTE 60
61 TQVKVWFQNR RTKFKRQKLE EEGSDSQQKK KGTHHINRWR IATKQASPEE IDVTSDD
|
| Detection Method: | |
| Confidence: | 25.69897 |
| Match: | 1b8iA |
| Description: | Ultrabithorax (ubx) homeodomain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.67711146264366 | bayes_pls_golite062009 |
| DNA binding | 4.26679916438424 | bayes_pls_golite062009 |
| nucleic acid binding | 4.10991419309805 | bayes_pls_golite062009 |
| transcription factor activity | 3.74788993580019 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.16521751467289 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.96364983538233 | bayes_pls_golite062009 |
| transcription repressor activity | 1.79427849359671 | bayes_pls_golite062009 |
| transcription activator activity | 1.6126228397074 | bayes_pls_golite062009 |
| transcription factor binding | 1.32991027110041 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.9526286147364 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| chromatin binding | 0.775421813815509 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.71989890364863 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.0615820877359203 | bayes_pls_golite062009 |
