| Protein: | HMX2_MOUSE |
| Organism: | Mus musculus |
| Length: | 273 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HMX2_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
|
142.0 | [0..1] | [273..1] |
|
|
140.0 | [0..1] | [273..1] |
|
|
140.0 | [0..1] | [273..1] |
|
|
138.0 | [0..1] | [273..1] |
|
|
135.0 | [0..1] | [273..1] |
|
|
130.0 | [0..1] | [218..33] |
|
|
130.0 | [0..11] | [251..29] |
|
|
129.0 | [0..1] | [218..33] |
|
|
129.0 | [0..16] | [209..1] |
|
Region A: Residues: [1-110] |
1 11 21 31 41 51
| | | | | |
1 MGSKEDVGKG CPAAGGVSSF TIQSILGGGP SEAPREPAGW PARKRSLSVS SEEEEPEEGW 60
61 KAPACFCPDP HGPKEPSPKH HTPIPFPCLG TPKGSGGAGP AASERTPFLS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [111-273] |
1 11 21 31 41 51
| | | | | |
1 PSHPDFKEEK ERLLPAGSPS PGPERPRDGG AERQTGAAKK KTRTVFSRSQ VYQLESTFDM 60
61 KRYLSSSERA CLASSLQLTE TQVKTWFQNR RNKWKRQLSA ELEAANMAHA SAQTLVGMPL 120
121 VFRDSSLLRV PVPRSLAFPA PLYYPSSNLS ALPLYNLYNK LDY
|
| Detection Method: | |
| Confidence: | 26.045757 |
| Match: | 1b8iA |
| Description: | Ultrabithorax (ubx) homeodomain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.20302368446064 | bayes_pls_golite062009 |
| DNA binding | 3.910335137985 | bayes_pls_golite062009 |
| nucleic acid binding | 3.70444192553266 | bayes_pls_golite062009 |
| transcription factor activity | 3.41495638905535 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.0896307866191 | bayes_pls_golite062009 |
| protein binding | 1.88087411289001 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.72533206529661 | bayes_pls_golite062009 |
| transcription repressor activity | 1.55910796763122 | bayes_pls_golite062009 |
| transcription activator activity | 1.36535925881104 | bayes_pls_golite062009 |
| transcription factor binding | 1.05399367242529 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.7265140277161 | bayes_pls_golite062009 |
| chromatin binding | 0.572427333286789 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.49703800163515 | bayes_pls_golite062009 |
