| Protein: | NTF3_MOUSE |
| Organism: | Mus musculus |
| Length: | 258 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NTF3_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
|
409.0 | [0..1] | [258..71] |
|
|
408.0 | [0..1] | [258..1] |
|
|
408.0 | [0..1] | [258..14] |
|
|
406.0 | [0..1] | [258..1] |
|
|
406.0 | [0..1] | [258..1] |
|
|
403.0 | [0..1] | [258..1] |
|
|
401.0 | [0..1] | [258..1] |
|
|
398.0 | [0..1] | [258..1] |
|
|
390.0 | [0..1] | [258..1] |
|
Region A: Residues: [1-134] |
1 11 21 31 41 51
| | | | | |
1 MSILFYVIFL AYLRGIQGNS MDQRSLPEDS LNSLIIKLIQ ADILKNKLSK QMVDVKENYQ 60
61 STLPKAEAPR EPEQGEATRS EFQPMIATDT ELLRQQRRYN SPRVLLSDST PLEPPPLYLM 120
121 EDYVGNPVVA NRTS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [135-258] |
1 11 21 31 41 51
| | | | | |
1 PRRKRYAEHK SHRGEYSVCD SESLWVTDKS SAIDIRGHQV TVLGEIKTGN SPVKQYFYET 60
61 RCKEARPVKN GCRGIDDKHW NSQCKTSQTY VRALTSENNK LVGWRWIRID TSCVCALSRK 120
121 IGRT
|
| Detection Method: | |
| Confidence: | 56.0 |
| Match: | 1b8kA |
| Description: | Neurotrophin 3, NT3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| growth factor activity | 4.74498867224238 | bayes_pls_golite062009 |
| receptor binding | 4.70889547404918 | bayes_pls_golite062009 |
| neurotrophin TRKB receptor binding | 4.62719877337644 | bayes_pls_golite062009 |
| neurotrophin TRK receptor binding | 4.62719877337644 | bayes_pls_golite062009 |
| neurotrophin p75 receptor binding | 4.09253117188665 | bayes_pls_golite062009 |
| cytokine activity | 3.61376517935324 | bayes_pls_golite062009 |
| receptor serine/threonine kinase binding | 3.60727548920187 | bayes_pls_golite062009 |
| transmembrane receptor protein serine/threonine kinase binding | 3.46872954776606 | bayes_pls_golite062009 |
| transforming growth factor beta receptor binding | 3.46872954776606 | bayes_pls_golite062009 |
| protein binding | 3.41839891062651 | bayes_pls_golite062009 |
| vascular endothelial growth factor receptor binding | 3.16494996397951 | bayes_pls_golite062009 |
| vascular endothelial growth factor receptor 2 binding | 3.0813162230094 | bayes_pls_golite062009 |
| cell surface binding | 2.9725198156666 | bayes_pls_golite062009 |
| type II transforming growth factor beta receptor binding | 2.85718611591787 | bayes_pls_golite062009 |
| binding | 2.85157432803513 | bayes_pls_golite062009 |
| platelet-derived growth factor receptor binding | 2.5098842713893 | bayes_pls_golite062009 |
| glycosaminoglycan binding | 2.49731836866959 | bayes_pls_golite062009 |
| vascular endothelial growth factor receptor 1 binding | 2.3694685471074 | bayes_pls_golite062009 |
| glial cell line-derived neurotrophic factor receptor binding | 2.18218102861024 | bayes_pls_golite062009 |
| growth factor binding | 2.15782167869238 | bayes_pls_golite062009 |
| heparin binding | 2.11784489374422 | bayes_pls_golite062009 |
| hormone activity | 2.10500409590202 | bayes_pls_golite062009 |
| protein dimerization activity | 1.82426827198541 | bayes_pls_golite062009 |
| transcription regulator activity | 1.71788348798334 | bayes_pls_golite062009 |
| protein homodimerization activity | 1.377005150119 | bayes_pls_golite062009 |
| molecular transducer activity | 1.3285764158511 | bayes_pls_golite062009 |
| signal transducer activity | 1.3285764158511 | bayes_pls_golite062009 |
| identical protein binding | 1.18858126900765 | bayes_pls_golite062009 |
| platelet-derived growth factor binding | 1.18476084022243 | bayes_pls_golite062009 |
| polysaccharide binding | 1.16191864095271 | bayes_pls_golite062009 |
| transcription activator activity | 1.12971001221094 | bayes_pls_golite062009 |
| collagen binding | 1.00551310632663 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.97031505698447 | bayes_pls_golite062009 |
| morphogen activity | 0.91146826241391 | bayes_pls_golite062009 |
| pattern binding | 0.90497366619649 | bayes_pls_golite062009 |
| nerve growth factor binding | 0.83909377726083 | bayes_pls_golite062009 |
| protein kinase activity | 0.81930974773732 | bayes_pls_golite062009 |
| neurotrophin receptor binding | 0.81172494974121 | bayes_pls_golite062009 |
| vascular endothelial growth factor receptor 3 binding | 0.772832351269279 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.461278618625267 | bayes_pls_golite062009 |
| kinase activity | 0.457160916814967 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.320182329352662 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.137002941165399 | bayes_pls_golite062009 |
| catalytic activity | 0.105223830172599 | bayes_pls_golite062009 |
| fibronectin binding | 0.0979012997097199 | bayes_pls_golite062009 |
| carbohydrate binding | 0.0235054088545197 | bayes_pls_golite062009 |
