| Protein: | HMGB3_MOUSE |
| Organism: | Mus musculus |
| Length: | 200 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HMGB3_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
|
183.0 | [0..13] | [180..375] |
|
|
171.0 | [0..1] | [185..167] |
|
|
170.0 | [0..13] | [193..364] |
|
|
156.0 | [0..1] | [185..77] |
|
|
155.0 | [0..4] | [185..118] |
|
|
146.0 | [0..2] | [163..689] |
|
Region A: Residues: [1-200] |
1 11 21 31 41 51
| | | | | |
1 MAKGDPKKPK GKMSAYAFFV QTCREEHKKK NPEVPVNFAE FSKKCSERWK TMSSKEKSKF 60
61 DEMAKADKVR YDREMKDYGP AKGGKKKKDP NAPKRPPSGF FLFCSEFRPK IKSTNPGISI 120
121 GDVAKKLGEM WNNLSDNEKQ PYVTKAAKLK EKYEKDVADY KSKGKFDGAK GPAKVARKKV 180
181 EEEEEEEEEE EEEEEEEEDE
|
| Detection Method: |  |
| Confidence: | 26.69897 |
| Match: | 2gzkA |
| Description: | No description for 2gzkA was found. |
| Term | Confidence | Notes |
| open form four-way junction DNA binding | 5.94145823677022 | bayes_pls_golite062009 |
| crossed form four-way junction DNA binding | 5.94145823677022 | bayes_pls_golite062009 |
| bent DNA binding | 5.94145823677022 | bayes_pls_golite062009 |
| DNA binding | 5.15324651287773 | bayes_pls_golite062009 |
| calcium-dependent protein kinase regulator activity | 5.14145584261223 | bayes_pls_golite062009 |
| nucleic acid binding | 5.01228762819617 | bayes_pls_golite062009 |
| transcription regulator activity | 4.9607192917135 | bayes_pls_golite062009 |
| transcription factor activity | 3.82658263870186 | bayes_pls_golite062009 |
| binding | 3.6211482127468 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.96229555092695 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.75319687398598 | bayes_pls_golite062009 |
| chromatin binding | 1.64428658020027 | bayes_pls_golite062009 |
| transcription activator activity | 1.62744929149746 | bayes_pls_golite062009 |
| transcription repressor activity | 1.53825678633232 | bayes_pls_golite062009 |
| protein binding | 1.131658134984 | bayes_pls_golite062009 |
| transcription factor binding | 1.10315330167937 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.97864089342287 | bayes_pls_golite062009 |
| DNA bending activity | 0.87985209274756 | bayes_pls_golite062009 |
| four-way junction DNA binding | 0.322458571311759 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.261169200304829 | bayes_pls_golite062009 |
