| Protein: | VPS25_MOUSE |
| Organism: | Mus musculus |
| Length: | 176 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS25_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
|
306.0 | [0..1] | [176..186] |
|
|
293.0 | [0..1] | [176..27] |
|
|
287.0 | [0..1] | [176..1] |
|
|
287.0 | [0..1] | [176..1] |
|
|
286.0 | [0..1] | [176..1] |
|
|
286.0 | [0..2] | [176..1] |
|
|
285.0 | [0..2] | [176..8] |
|
Region A: Residues: [1-176] |
1 11 21 31 41 51
| | | | | |
1 MAMSFEWPWQ YRFPPFFTLQ PNVDTRQKQL AAWCSLVLSF CRLHKQSSMT VMEAQESPLF 60
61 NNVKLQRKLP VESIQIVLEE LRKKGNLEWL DKNKSSFLIM WRRPEEWGKL IYQWVSRSGQ 120
121 NNSVFTLYEL TSGEDTEDEE FHGLDEATLL RALQALQQEH KAEIITVSDG RGVKFF
|
| Detection Method: |  |
| Confidence: | 54.221849 |
| Match: | 1u5tC |
| Description: | Structure of the ESCRT-II endosomal trafficking complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.77201910025409 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| DNA binding | 3.44642410378325 | bayes_pls_golite062009 |
| nucleic acid binding | 3.38144578566524 | bayes_pls_golite062009 |
| transcription factor activity | 2.83460075788873 | bayes_pls_golite062009 |
| transcription repressor activity | 2.39237599101586 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.08341148210578 | bayes_pls_golite062009 |
| transcription activator activity | 1.98504395280033 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.35380365970626 | bayes_pls_golite062009 |
| transferase activity | 1.0863867010063 | bayes_pls_golite062009 |
| signal transducer activity | 0.968719315363638 | bayes_pls_golite062009 |
| molecular transducer activity | 0.968719315363638 | bayes_pls_golite062009 |
| protein binding | 0.753698599635855 | bayes_pls_golite062009 |
| transcription factor binding | 0.63938506997853 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.42135864069093 | bayes_pls_golite062009 |
| hydrolase activity | 0.140191206949582 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.136726704233672 | bayes_pls_golite062009 |
| specific transcriptional repressor activity | 0.0565989703351002 | bayes_pls_golite062009 |
