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View Structure Prediction Details

Protein: gi|89104079, gi|...
Organism: Yersinia pestis biovar Orientalis str. IP275
Length: 390 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|89104079, gi|....

Description E-value Query
Range		 Subject
Range
OBG_ACTSZ - GTPase Obg OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=obg PE=3 SV=1
 2.0E-72 [1..390] [1..388]
gi|238724369, gi... - gi|77974006|ref|ZP_00829549.1| COG0536: Predicted GTPase [Yersinia frederiksenii ATCC 33641], gi|238...
 3.0E-71 [1..390] [1..390]
OBG_SODGM - GTPase Obg OS=Sodalis glossinidius (strain morsitans) GN=obg PE=3 SV=1
 8.0E-71 [1..390] [1..385]
gi|42630290 - gi|42630290|ref|ZP_00155834.1| COG0536: Predicted GTPase [Haemophilus influenzae R2846]
 8.0E-71 [1..363] [1..363]
OBG_PASMU - GTPase obg OS=Pasteurella multocida GN=obg PE=3 SV=1
OBG_PASMU - GTPase Obg OS=Pasteurella multocida (strain Pm70) GN=obg PE=3 SV=1
 1.0E-70 [1..363] [1..363]
gi|67154301 - gi|67154301|ref|ZP_00416046.1| GTP1/OBG sub-domain [Azotobacter vinelandii AvOP]
OBG_AZOVD - GTPase Obg OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=obg PE=3 SV=1
 4.0E-70 [1..384] [1..384]
gi|53729103 - gi|53729103|ref|ZP_00134062.2| COG0536: Predicted GTPase [Actinobacillus pleuropneumoniae serovar 1 ...
OBG_ACTP2 - GTPase Obg OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=obg PE=3 SV=1
 4.0E-70 [1..390] [1..390]
gi|52629966, gi|... - gi|52842855|ref|YP_096654.1| GTP-binding protein, GTP1/Obg family [Legionella pneumophila subsp. pne...
 5.0E-70 [1..337] [59..396]
gi|145272633, gi... - gi|145638304|ref|ZP_01793914.1| GTPase ObgE [Haemophilus influenzae PittII], gi|145272633|gb|EDK1254...
gi|46133177 - gi|46133177|ref|ZP_00156739.2| COG0536: Predicted GTPase [Haemophilus influenzae R2866]
OBG_HAEI8 - GTPase Obg OS=Haemophilus influenzae (strain 86-028NP) GN=obg PE=3 SV=1
 5.0E-70 [1..362] [1..362]
OBG_IDILO - GTPase obg OS=Idiomarina loihiensis GN=obg PE=3 SV=1
OBG_IDILO - GTPase Obg OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=obg PE=3 SV=1
 1.0E-69 [1..357] [1..357]

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Predicted Domain #1
Region A:
Residues: [1-390] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFVDEAAIL VVAGDGGNGC VSFRREKYIP NGGPDGGDGG DGGDIYLLAD ENLNTLIDYR  60
   61 FVKSFRAERG QNGQSRDCTG KRGKDITIKV PVGTRVLDQG TGEIVGDMVR HGQRLMVAKG 120
  121 GFHGLGNSRF KSSVNRAPRQ KTMGTEGETR ELMLELLLLA DVGMLGLPNA GKSTFIRAVS 180
  181 AAKPKVADYP FTTLIPSLGV VRMDYEQSFV IADIPGLIEG ASDGAGLGIR FLKHLERCRV 240
  241 LLHLVDLAPI DESDPAENAK VIVNELQQYS ENLAEKPRWL VFNKIDLIDP EEAEKRAKAI 300
  301 VETLGWEGKY YMISAANRDN VNALCWDVMS FLNSQPKAMA IAESVPEKVE FMWDDYHREQ 360
  361 LAEVEAEAED DWDDDWDEED DDGVEIIYER

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.0
Match: 1lnzA
Description: Obg GTP-binding protein N-terminal domain; Obg GTP-binding protein C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.62320027057768 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
RNA helicase activity 0.94708387424268 bayes_pls_golite062009
ATP-dependent RNA helicase activity 0.93133090558732 bayes_pls_golite062009
RNA-dependent ATPase activity 0.91827876091109 bayes_pls_golite062009
nucleic acid binding 0.913322399315129 bayes_pls_golite062009
GTPase activity 0.87408935068982 bayes_pls_golite062009
structural constituent of ribosome 0.738234102557832 bayes_pls_golite062009
purine nucleotide binding 0.569910969126728 bayes_pls_golite062009
purine ribonucleotide binding 0.568840867400671 bayes_pls_golite062009
ribonucleotide binding 0.568779924702229 bayes_pls_golite062009
nucleotide binding 0.564275755355315 bayes_pls_golite062009
hydrolase activity 0.441914529351098 bayes_pls_golite062009
DNA binding 0.376487324624615 bayes_pls_golite062009
translation regulator activity 0.29096092258568 bayes_pls_golite062009
translation factor activity, nucleic acid binding 0.274994961137851 bayes_pls_golite062009
ATP binding 0.1860481660648 bayes_pls_golite062009
adenyl ribonucleotide binding 0.152859582615242 bayes_pls_golite062009
transcription regulator activity 0.150159515184919 bayes_pls_golite062009
adenyl nucleotide binding 0.138615225841109 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.0880086189831292 bayes_pls_golite062009
pyrophosphatase activity 0.0746809525189132 bayes_pls_golite062009
structural molecule activity 0.0558641287316701 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.0557582578674931 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.0529869469040288 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle