YRC Public Data Repository - Protein Structure Prediction

Protein:	FABP5_MOUSE
Organism:	Mus musculus
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FABP5_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114658435 - gi\|114658435\|ref\|XP_001142851.1\| PREDICTED: similar to cellular retinoic acid-binding protein; CRABP...	185.0	[0..4]	[133..245]
gi\|82996322, gi\|... - gi\|94405538\|ref\|XP_001001967.1\| PREDICTED: similar to Fatty acid-binding protein, epidermal (E-FABP)...	177.0	[0..1]	[135..1]
gi\|1836058 - gi\|1836058\|gb\|AAB46848.1\| DA11 [Rattus sp.]	176.0	[0..1]	[135..1]
FABP7_BOVIN - Fatty acid-binding protein, brain OS=Bos taurus GN=FABP7 PE=1 SV=2	175.0	[0..4]	[133..2]
FABP5_RAT - Fatty acid-binding protein, epidermal OS=Rattus norvegicus GN=Fabp5 PE=1 SV=3 gi\|546420 - gi\|546420\|gb\|AAB30574.1\| C-FABP [Rattus sp.]	174.0	[0..1]	[135..1]
FABP7_CHICK - Fatty acid-binding protein, brain OS=Gallus gallus GN=FABP7 PE=2 SV=2	174.0	[0..4]	[133..2]
CCDS5127.1_1 - null gi\|109072829, gi... - gi\|109072829\|ref\|XP_001108559.1\| PREDICTED: fatty acid binding protein 7, brain isoform 2 [Macaca mu... gi\|90082527 - gi\|90082527\|dbj\|BAE90445.1\| unnamed protein product [Macaca fascicularis]	174.0	[0..4]	[133..2]
gi\|68535004, gi\|... - gi\|68535004\|ref\|NP_001020400.1\| fatty acid binding protein 7, brain [Sus scrofa], gi\|62866607\|gb\|AAY...	174.0	[0..4]	[133..2]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLKDLEGK WRLMESHGFE EYMKELGVGL ALRKMAAMAK PDCIITCDGN NITVKTESTV  60
   61 KTTVFSCNLG EKFDETTADG RKTETVCTFQ DGALVQHQQW DGKESTITRK LKDGKMIVEC 120
  121 VMNNATCTRV YEKVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.522879
Match:	1b56A
Description:	HUMAN RECOMBINANT EPIDERMAL FATTY ACID BINDING PROTEIN
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
long-chain fatty acid transporter activity	4.03130183716737	bayes_pls_golite062009
retinoid binding	3.86745158299736	bayes_pls_golite062009
isoprenoid binding	3.80802424204178	bayes_pls_golite062009
fatty acid transporter activity	3.78208104687342	bayes_pls_golite062009
retinol binding	3.41359399354212	bayes_pls_golite062009
binding	2.93830472620404	bayes_pls_golite062009
transcription regulator activity	2.27413749831465	bayes_pls_golite062009
lipid transporter activity	1.7304520084656	bayes_pls_golite062009
transcription repressor activity	1.45696778890481	bayes_pls_golite062009
protein binding	1.23450129884619	bayes_pls_golite062009
prostaglandin-D synthase activity	1.18764036773412	bayes_pls_golite062009
lipid binding	1.0002255159651	bayes_pls_golite062009
retinol transporter activity	0.811095267558536	bayes_pls_golite062009
fatty acid binding	0.761923641769607	bayes_pls_golite062009
retinoic acid binding	0.539496110498594	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.50851501669551	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: