| Protein: | MYF5_MOUSE |
| Organism: | Mus musculus |
| Length: | 255 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MYF5_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
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214.0 | [0..1] | [255..1] |
|
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213.0 | [0..1] | [255..1] |
|
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212.0 | [0..1] | [255..1] |
|
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200.0 | [0..1] | [255..1] |
|
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199.0 | [0..1] | [255..73] |
|
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199.0 | [0..1] | [255..1] |
|
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198.0 | [0..1] | [255..1] |
|
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197.0 | [0..1] | [255..1] |
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189.0 | [0..1] | [255..1] |
|
Region A: Residues: [1-72] |
1 11 21 31 41 51
| | | | | |
1 MDMTDGCQFS PSEYFYEGSC IPSPEDEFGD QFEPRVAAFG AHKAELQGSD DEEHVRAPTG 60
61 HHQAGHCLMW AC
|
| Detection Method: |  |
| Confidence: | 30.142668 |
| Match: | PF01586.7 |
| Description: | No description for PF01586.7 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [73-149] |
1 11 21 31 41 51
| | | | | |
1 KACKRKSTTM DRRKAATMRE RRRLKKVNQA FETLKRCTTT NPNQRLPKVE ILRNAIRYIE 60
61 SLQELLREQV ENYYSLP
|
| Detection Method: | |
| Confidence: | 18.69897 |
| Match: | 1mdyA |
| Description: | Myod B/HLH domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.38658950816179 | bayes_pls_golite062009 |
| DNA binding | 5.18654839258297 | bayes_pls_golite062009 |
| nucleic acid binding | 5.05768805749761 | bayes_pls_golite062009 |
| transcription factor activity | 4.78039531631248 | bayes_pls_golite062009 |
| transcription activator activity | 3.87875547821718 | bayes_pls_golite062009 |
| binding | 3.81829206350975 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.42035985454056 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.39500382187264 | bayes_pls_golite062009 |
| protein binding | 2.64975291677725 | bayes_pls_golite062009 |
| transcription factor binding | 2.61163564741984 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 2.42306484786159 | bayes_pls_golite062009 |
| promoter binding | 1.56457725225443 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.52770895937238 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.39260472877067 | bayes_pls_golite062009 |
| transcription repressor activity | 0.955588849035129 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.801830750183111 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.53175615551166 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.3655541712365 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.29436315000437 | bayes_pls_golite062009 |
| protein dimerization activity | 0.20674648626116 | bayes_pls_golite062009 |
|
Region A: Residues: [150-255] |
1 11 21 31 41 51
| | | | | |
1 GQSCSEPTSP TSNCSDGMPE CNSPVWSRKN SSFDSIYCPD VSNACAADKS SVSSLDCLSS 60
61 IVDRITSTEP SELALQDTAS LSPATSANSQ PATPGPSSSR LIYHVL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
