| Protein: | SSRP1 |
| Organism: | Homo sapiens |
| Length: | 709 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSRP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..709] | [1..709] |
|
|
0.0 | [1..709] | [1..708] |
|
|
0.0 | [1..709] | [1..709] |
|
|
0.0 | [1..709] | [1..708] |
|
|
0.0 | [1..709] | [1..708] |
|
|
0.0 | [1..615] | [1..615] |
|
Region A: Residues: [1-169] |
1 11 21 31 41 51
| | | | | |
1 MAETLEFNDV YQEVKGSMND GRLRLSRQGI IFKNSKTGKV DNIQAGELTE GIWRRVALGH 60
61 GLKLLTKNGH VYKYDGFRES EFEKLSDFFK THYRLELMEK DLCVKGWNWG TVKFGGQLLS 120
121 FDIGDQPVFE IPLSNVSQCT TGKNEVTLEF HQNDDAEVSL MEVRFYVPP
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [170-427] |
1 11 21 31 41 51
| | | | | |
1 TQEDGVDPVE AFAQNVLSKA DVIQATGDAI CIFRELQCLT PRGRYDIRIY PTFLHLHGKT 60
61 FDYKIPYTTV LRLFLLPHKD QRQMFFVISL DPPIKQGQTR YHFLILLFSK DEDISLTLNM 120
121 NEEEVEKRFE GRLTKNMSGS LYEMVSRVMK ALVNRKITVP GNFQGHSGAQ CITCSYKASS 180
181 GLLYPLERGF IYVHKPPVHI RFDEISFVNF ARGTTTTRSF DFEIETKQGT QYTFSSIERE 240
241 EYGKLFDFVN AKKLNIKN
|
| Detection Method: | |
| Confidence: | 93.522879 |
| Match: | 2gcjA |
| Description: | No description for 2gcjA was found. |
|
Region A: Residues: [428-538] |
1 11 21 31 41 51
| | | | | |
1 RGLKEGMNPS YDEYADSDED QHDAYLERMK EEGKIREENA NDSSDDSGEE TDESFNPGEE 60
61 EEDVAEEFDS NASASSSSNE GDSDRDEKKR KQLKKAKMAK DRKSRKKPVE V
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [539-709] |
1 11 21 31 41 51
| | | | | |
1 KKGKDPNAPK RPMSAYMLWL NASREKIKSD HPGISITDLS KKAGEIWKGM SKEKKEEWDR 60
61 KAEDARRDYE KAMKEYEGGR GESSKRDKSK KKKKVKVKME KKSTPSRGSS SKSSSRQLSE 120
121 SFKSKEFVSS DESSSGENKS KKKRRRSEDS EEEELASTPP SSEDSASGSD E
|
| Detection Method: | |
| Confidence: | 39.221849 |
| Match: | 2gzkA |
| Description: | No description for 2gzkA was found. |
| Term | Confidence | Notes |
| DNA binding | 5.15324651287773 | bayes_pls_golite062009 |
| nucleic acid binding | 5.01228762819617 | bayes_pls_golite062009 |
| transcription regulator activity | 4.9607192917135 | bayes_pls_golite062009 |
| transcription factor activity | 3.82658263870186 | bayes_pls_golite062009 |
| binding | 3.6211482127468 | bayes_pls_golite062009 |
| transcription repressor activity | 3.17018042329608 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.96229555092695 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.75319687398598 | bayes_pls_golite062009 |
| transcription activator activity | 1.62744929149746 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.51189746794562 | bayes_pls_golite062009 |
| protein binding | 1.131658134984 | bayes_pls_golite062009 |
| transcription factor binding | 1.10315330167937 | bayes_pls_golite062009 |
| chromatin binding | 0.996049314969019 | bayes_pls_golite062009 |
| DNA bending activity | 0.87985209274756 | bayes_pls_golite062009 |
| specific transcriptional repressor activity | 0.4255419067266 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.392549154964715 | bayes_pls_golite062009 |
| open form four-way junction DNA binding | 0.293183929205961 | bayes_pls_golite062009 |
| bent DNA binding | 0.293183929205961 | bayes_pls_golite062009 |
| crossed form four-way junction DNA binding | 0.293183929205961 | bayes_pls_golite062009 |
| DNA secondary structure binding | 0.18003196535795 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.0654173145582195 | bayes_pls_golite062009 |
